------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018327251.1:subseq_331924,65942_ Strand = - Positions = 29466 - 29391
 Found by:  Infernal (score=29.24) Covels (score=25.0)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -23.23

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .({(((((((--....([[(((-(((((((.................))))))).)))]])......-..)))))))}).
 target  UAGGGGCAUC--UCCAUGAUGG-UGGGUCCCAAAGCCCCUGUGGGCAGGACCCAACCAGAACCUUCC-UUGGUGCCUGUC
                         ****           ^^^                       ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = NW_018327251.1:subseq_331924,65942_ Strand = + Positions = 49472 - 49540
 Found by:  Infernal (score=15.78) Covels (score=1.76)
 Stem2 length = 7   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -17.3

         ..(((((((..........((((((((((((.....................))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ..(((({{((((.......([[{(({(((((...........----------)))))}))}]])..--.))))}}))))..
 target  UCAGGGCCAGCUGUCUUAGUGAAGGCCCAGGGCCAGAAUCAG----------CCUGGACCAGAGGU--AAGCUUCCUCUUC
                            ****         ^^                          ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = NW_018327251.1:subseq_331924,65942_ Strand = + Positions = 59727 - 59801
 Found by:  Infernal (score=11.62)
 Stem2 length = 7   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -9.39

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .({((((((.--....([[{(([{(({((.......-...........))}))}]))}]]).....-...))))))}).
 target  UUUGGGGAAU--UCCAGGAUGGGCGGUGGGUUAAUA-GGCUUGGGGCACUUCCUACCUGAUUUUAA-CCUUUCCUCCAC
                         ****            ^^                       ****