_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 1e-39
 Query name: gi|253735679|ref|NP_001156697.1| selenoprotein W [Bos taurus] >gi|926715106|ref|XP_005709438.2| PREDICTED: selenoprotein W [Capra hircus] >gi|942070116|ref|XP_005911745.2| PREDICTED: selenoprotein W isoform X2 [Bos mutus] >gi|190358775|sp|O19097.4|SELW_SHEEP RecName: Full=Selenoprotein W; Short=SelW >gi|2326179|gb|AAC48757.1| selenoprotein W [Ovis aries] >gi|296477483|tpg|DAA19598.1| TPA: selenoprotein W, 1 [Bos taurus] >gi|444246427|gb|AGD94592.1| selenoprotein W1 [Bubalus bubalis]
 Query range: 1-87  (total 87)

 Target: /data/www-rg/seblastian_results/479662780/tempfiles/temptarget.fasta
 Chromosome: NW_018338398.1:subseq_2457233,10209_ Strand: -
 Positions:
 -Exon 1  4949         5209

 Redox box: YES

Query   MAVVVRVVYCGAUGYKPKYLQLKKKLEDEFPSRLDICGEGTPQVTGFFEVFVAGKLVHSKKGGDGYVDTESKFLKLVAAIKAALAQA
        ||||| ||||||||/||||||||/|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MAVVVLVVYCGAUGHKPKYLQLKEKLEDEFPSRLDICGEGTPQVTGFFEVFVAGKLVHSKKGGDGYVDTESKFLKLVAAIKAALAQA
        aggggcggttggtgcacatcccagatgggtcaccgatgggaccgagttggtgggacgctaaggggtggagaatcacgggaaggtgcg
        tcttttttaggcggaacaatataaataaatcggtatggagccatcgttatttcgattacaaggagatacagattattcctacctcac
        gcaccggtttctaccgcgttgcgggaatgctctgccccggtagcccctagcaaaggtccggagtccgcggcgtggggcccattgtgc
                    *                                                                          
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 45 ; UGA-SECIS: 267

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018338398.1:subseq_2457233,10209_ Strand = - Positions = 4903 - 4825
 Found by:  Infernal (score=31.86) Covels (score=32.94)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -22.09

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((([((.......{[[{{((((((((((..................))))))))))}}]]}..--....))]))))..
 target  CCCGGCAGUCGCUUCAUGACAGGAAGGGCUGAAGUGUCUCUUGGACGCCUGGCCCUUCCCUGAUGU--UCUCACGGCCGCU
                         ****           ^^                           ****