_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-28
 Query name: gi|821102030|ref|XP_012375807.1| PREDICTED: selenoprotein M, partial [Dasypus novemcinctus]
 Query range: 13-125  (total 125)

 Target: /data/www-rg/seblastian_results/898137627/tempfiles/temptarget.fasta
 Chromosome: NW_018338198.1:subseq_734033,60314_ Strand: +
 Positions:
 -Exon 1  29342        29410
 -Exon 2  29608        29642
 -Exon 3  29999        30077
 -Exon 4  30159        30314

 Redox box: YES

Query   APDLLHFVPLQTCGGUQLNRLKE <---Intron---> VKAFVTQDIPFY <---Intron---> HNLVMKHLPGADPELVLLDHRYEELE <---In
        |||  |||||||||||||||||| <   197bp    > |||||||||| | <   356bp    > |||||||||||||||||| ||/|||| <    8
Target  APDRSHFVPLQTCGGUQLNRLKE                VKAFVTQDIPLY                HNLVMKHLPGADPELVLLGHRFEELE       
        gcgctctgcccatggtccaccag                gagtgacgacct                cacgaacccgggcgcgtcgcctggcg       
        ccagcattctacggggatagtaa                tacttcaatcta                aatttaatcgcacattttgagtaata       
        ttcactttccgataaagttcggg                ggccccgccac                cccgggacgggccagcgggccccgagg       
                       *                                                                                    

Query   tron---> RIPLSDMTREEINALVQELGFYRKAAPDAPVPPEYLRAPARPAEGDPDRADL
        1bp    > |||||||||||||||||||||||||/|| |||||||||||||| | || |||
Target           RIPLSDMTREEINALVQELGFYRKASPDEPVPPEYLRAPARPAGGAPDHADL
                 caccagaacggaagcgcgcgttcagtcggcgccgtccgcgacggggcgcggc
                 gtctgatcgaatacttaatgtagacccaactccaatgcccgccggccaacat
                 atacccgccggccgggggcccccgggctgtgcggctggctgccacttccacg
                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 42 ; UGA-SECIS: 333

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018338198.1:subseq_734033,60314_ Strand = + Positions = 30357 - 30429
 Found by:  Infernal (score=14.54) Covels (score=22.68)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -23.79

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[{(({((((((((................))))))))}))}]]}..--..-.)))))))..
 target  CCUGGGGAC---CGAAUGAAGCGCUCAGCGGCCCGGGAGCACCUCCCUCGUUGAGGGCCGACGC--AC-CGUCCCCGAG
                         ****           ^^                         ****