_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-12
 Query name: gi|942054491|ref|XP_005895759.2| PREDICTED: ethanolaminephosphotransferase 1 [Bos mutus]
 Query range: 1-397  (total 397)

 Target: /data/www-rg/seblastian_results/281691732/tempfiles/temptarget.fasta
 Chromosome: NW_018336909.1:subseq_773734,98005_ Strand: +
 Positions:
 -Exon 1  30000        30056
 -Exon 2  47244        47312
 -Exon 3  47760        47868
 -Exon 4  50017        50091
 -Exon 5  54970        55232
 -Exon 6  56140        56248
 -Exon 7  62319        62367
 -Exon 8  64356        64536
 -Exon 9  65728        65910
 -Exon 10 67910        68005

 Redox box: no

Query   MASYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNTVVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLL
        ||||||||||||||||||| <  17187bp   > ||||||||||||||||||||||| <   447bp    > |||||||||||||||||||||||||/
Target  MASYEYVSPEQLAGFDKYK                YSAVDTNPLSLYVMHPFWNTVVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        agatgtgacgccggtgata                tagggaacctctgaccttaagga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgactta                ttccgtccattctcgttttttatttt
        gatcacgcggggtcttgcg                cttgtctactctcgcatgctcag                atttggtatgacctctggtgcttatg
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFMAYTLD <---Intron---> GVDGKQARRTNSSSPLGELFDHGLDSWSCVYF
        ||||||||||| <   2148bp   > ||||||||||||||||||||||||| <   4878bp   > |||||||||||||/||||||||||||||||||
Target  AYFDPDFYASA                PGHKHVPDWVWIVVGILNFMAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgcacgcgtgtagggacatagtacg                ggggacgcaaataaccggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtat
        actttcttta                aatcgtaccgcgtagccctcgccta                ttgcagactactcccgtggttctcgttgattct
                                                                                                            

Query   VVTVYSIFGRGSSGVSVFLLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ||||||||||||||||||/|||||||||||||||||||||||||||||||||||| <   907bp    > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGSSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ggagttatgcgttggagtgctccctggttttactctgataagactcctgtgaacg                aattgtagagggggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tccgtcttaaaattcttttttcgagatgttccatcgagtcagttcgagatctcgg                ttttccagtgtgatgcgtatcgttcatac
                                                                                                            

Query   LFTAMIFG <---Intron---> CALCVTLPMSLLNFFR <---Intron---> SYKNNTLKHNSVYEAVVPFFSPCLLFILSTAWILLSPSDILELH
        |||||| | <   6070bp   > |||||||||||||||| <   1988bp   > ||||||||/|||||||||||||||||||||||||||||||||||
Target  LFTAMIIG                CALCVTLPMSLLNFFR                SYKNNTLKYNSVYEAVVPFFSPCLLFILSTAWILLSPSDILELH
        ctagaaag                tgctgaccaattatta                ataaaatatatgtggggctttcttctattagtacctctgatgtc
        ttccttt                ggctgtctctgttattg                gaaaactaaactaacttcttccgtttttcccgtttcccattata
        actagct                ttagcgttggtgattc                actatcggactactatgtccttatgactgtaagccgatattagac
                                                                                                            

Query   PRVFYLMVGTAFANST <---Intron---> CQLIVCQMSSTRCPTLNWLLLPLFVIVMVVNVGVTPYVESILLFTLTAAFTLAHIHYGVRV <---In
        |||||||||||||||| <   1191bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||/||||/| <   19
Target  PRVFYLMVGTAFANST                CQLIVCQMSSTRCPTLNWLLLPLFVIVMVVNVGVTPYVESILLFTLTAAFTLAHVHYGVQV       
        cagtttaggagtgaaa                tccagtcaaaactcatattcccctgagaggagggactggaacctataggtatgcgctggcg       
        cgttatttgcctcagc                gatttgatggcggcctagtttcttttttttatgtccatagttttctccctctcataagtat       
        tagccagtaactccca                tggtttagctcgcatgtgggttttgtcgggtaaactctgctcgtgagttctgttcctaaag       
                                                                                                            

Query   tron---> VKQLSNHFHIYPFSLRKPNSDULGVEEKNIGL
        99bp   > ||||||||||||||||||||||||||||||||
Target           VKQLSNHFHIYPFSLRKPNSDULGVEEKNIGL
                 gaccaactcatctttaacatgtcggggaaagc
                 taatgaatatactctgacacagtgtaaaatgt
                 agggccttctcccagaaatataaagaagttcg
                                      *          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1471 ; UGA-SECIS: 1501

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018336909.1:subseq_773734,98005_ Strand = + Positions = 69477 - 69554
 Found by:  Infernal (score=25.8) Covels (score=22.61)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 1
 Free Energy = -5.01

         ..(((((((.......(((((((((((((((.................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ...(({({((......{[[[((((((((((...................))).)))))))]]]}..--..-))})}))...
 target  GAAGUUUGUGCUUGAAUGAAGAGUGUAUCUUAAACCCUUUUUUUUGGACGGAUUGCACUUGGAUAA--AA-UAGGCACCAC
                         ****           ^^^                          ****