_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-19
 Query name: gi|820980696|ref|XP_012371964.1| PREDICTED: 15 kDa selenoprotein, partial [Octodon degus]
 Query range: 8-145  (total 145)

 Target: /data/www-rg/seblastian_results/243949373/tempfiles/temptarget.fasta
 Chromosome: NW_018339842.1:subseq_1983894,97923_ Strand: -
 Positions:
 -Exon 1  60305        60475
 -Exon 2  45340        45403
 -Exon 3  32575        32624
 -Exon 4  30000        30128

 Redox box: no

Query   SVSAFKEQFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK <---Intron---> LYAGAILEVCGUKLGRFPQVQA <---
         |||   /||||/|||||||||||||||||||||/|||||||||||||||||||||| <  14901bp   > |||||||||||||||||||||| <  1
Target  QVSALGAEFSSESCRELGFSSNLLCSSCDLLGQFSLLQLDPDCRGCCQEEAQFETKK                LYAGAILEVCGUKLGRFPQVQA     
        cgtgcgggtttgttcgtgttaatctattgtcgctaccccgcgtagttcgggctgaaa                ctgggacggtgtatgatccgcg     
        atcctgcatccacggatgtcgattggcgattgatgttatacagggggaaacatacaa                tacgcttatgggatggtcata      
        gctggaagtcagtcgggtccccgcccctcgtagcctgggctctagctggaaatatag                gtaatttactaaagggctaca      
                                                                                            *               

Query   Intron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERI
        2715bp   > ||||||||||/||||| <   2446bp   > |||||||||||||||||||||||||||||||||||||||||||
Target             FVRSDKPKLFKGLQIK                YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERI
                   tgaagacactagccaa                tgcgtgcgcactggagaagggcaacataagagggtcagatgca
                  cttggaacattagtata                atggcacttattaaggatcaatgttagacagtaattgaatagt
                  tccgttacaacaagacg                ttctactgagtgcctgcttaaacccagcactaaacgtaggaca
                                                                                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 578 ; UGA-SECIS: 785

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018339842.1:subseq_1983894,97923_ Strand = - Positions = 29421 - 29344
 Found by:  Infernal (score=30.63) Covels (score=24.29)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -14.46

         ..(((((((.......(((((((((((((((...............))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         (((((((((((.....{[[(({(((((((((...............))))))))).}))]]}.....-)-))))))))))
 target  UAAAGAUUUGCAUUAAUGAAGACUACACAGAAAACCUCCCUGAGGAUUUGUGUGGACCUGAUAUUUA-G-CAAAUUUUUG
                         ****           ^^^                        ****