_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|965818441|ref|XP_011980227.2| PREDICTED: selenide, water dikinase 2 isoform X2 [Ovis aries musimon]
 Query range: 1-450  (total 450)

 Target: /data/www-rg/seblastian_results/655878900/tempfiles/temptarget.fasta
 Chromosome: NW_018343187.1:subseq_143508,61244_ Strand: +
 Positions:
 -Exon 1  29898        31247

 Redox box: no

Query   MAEVAATGAGGEAMAAVAAGEGSSGPVGLPLGRGFSSYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPEVLPAPGRGLVGGLEETA
        |||||||||||| |||||||||||||| ||||||||/|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MAEVAATGAGGEVMAAVAAGEGSSGPVCLPLGRGFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPEVLPAPGRGLVGGLEETA
        agggggaggggggaggggggggttgcgttccgcgttatcctgccgtgcacatccagttgaagtgtagccgaccaccggcaccggccgcgcgcgggcggag
        tcatcccgcggattcctccgagccgctgtctgggtcaagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcattcccgggttggtaacc
        ggacggtcgcagtggaggagaccgcggcatacgccgccgccgcgggtccgcgtcccctcggcaccgccggggcacggaggaggggcggcgcgcactaggc
                                                                      *                                     

Query   QEAGLPVRAEPSPPFPSLGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMPEEEREKITPLMIK
        ||||||/|/|||||||/||||||||||||||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||||||
Target  QEAGLPMRSEPSPPFPTLGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSQSMPEEEREKITPLMIK
        cgggccaatgcacctcacgagagttgaccacggctcgcaagtttccgggctaagcagtgagcagctgaggagtgaataccagacaacgggcgaaaccaaa
        aacgtctgcacgcctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtcaaagaatccttta
        gactgggggacctccccgctggccccacgatgcgcgggctcctccggatccgggccgcccggtccccgcttgtccgggaccccgtgtgggaagaaacgta
                                                                                                            

Query   GFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFILPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKIKMVVSREEVELGYQEAMFNMAT
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFILPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKIKMVVSREEVELGYQEAMFNMAT
        gtcgggggggaggaggcaggactaaaggggaggtccagtaccgaggggggcgtaactgacgggagcctcgacgctaaaaaggtaggggcgtcggataaga
        gtgaccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatgaaacttatcc
        ttgttcgaagtagttgaggactgtcctatttgataataccgtcccttgcgcgacacaacgtcctccaggtttaagtgagggccaagaggttgacgccgtg
                                                                                                            

Query   LNRIAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LNRIAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGE
        caaagggcacatagcggagaagtgacgctcacgaccaaggttgacaccaagaaggaaagagctgcccgatggatggccatccagcggctttgaattatgg
        tagtccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaaga
        ctattcaggcgttccacatccctctgtctgctaaaaatgcctctttgcctcggtcccgccgcctcgaacaaattggagttgaaagatcttaacataatag
                                                                                                            

Query   GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATATLAPENSSASSEPSL
        ||||||||||||||||||||||||||||||||||||||||||| ||||||
Target  GHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATATLAPENSSVSSEPSL
        gccgtaggaggagacagcaagaccgaggcccggagacgcgatagttgcat
        gaacgttgttaagagccgttaacgttattcggcccctccaacgtccacgt
        ttaggccttgagacgacgctcgtcttgcgttgcttttttgcctgctgtcg
                                                          
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 562 ; UGA-SECIS: 1723

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018343187.1:subseq_143508,61244_ Strand = + Positions = 31810 - 31883
 Found by:  Infernal (score=27.52) Covels (score=22.19)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -21.27

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((({(((((--....{[[{(((((((((.......-...........)))))))))}]]}.....-.-)))))}))))
 target  UUGGUCUCUG--UUAAUGACGUCUCUCUCUAAACCC-CUUUAAGGACUGGGAGAGGCAGACCAAAC-C-CAGAGCCCAG
                         ****          ^^^                        ****