_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-27
 Query name: gi|926722089|ref|XP_005696754.2| PREDICTED: glutathione peroxidase 6 [Capra hircus] >gi|965991328|ref|XP_004019101.2| PREDICTED: glutathione peroxidase 6 [Ovis aries]
 Query range: 1-221  (total 221)

 Target: /data/www-rg/seblastian_results/917194790/tempfiles/temptarget.fasta
 Chromosome: NW_018327251.1:subseq_331924,65942_ Strand: -
 Positions:
 -Exon 1  35856        35942
 -Exon 2  34243        34396
 -Exon 3  32247        32364
 -Exon 4  30972        31071
 -Exon 5  30000        30203

 Redox box: no

Query   MILQLWASCLFPLFLVSLAQLTPKQQQMK <---Intron---> VDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFVNVATYUGLTAQYPE <-
        |||/|||||||||||| |||||||||||| <   1459bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MILRLWASCLFPLFLVGLAQLTPKQQQMK                VDCYKGVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFVNVATYUGLTAQYPE   
        aaccctgttctcctcggtgccacacccaa                ggttaggagaatgtggcacagggtactactggacgctgaggattgtagctcg   
        tttgtgccgttcttttgtcatccaaaata                tagaagtcgctaaagctctagaaatataaacgaattttatccaggtccaac    
        gcggcgccttcagtgccatggtgggaggg                gtctgggaccctgtaccccttggtcacggtgcgtcgtctgcctacgatgta    
                                                                                                *           

Query   --Intron---> LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
          1878bp   > ||||||||||||||||||||||||||||||||||||||| <   1175bp   > ||||||||||||||||||||||||||||||||
Target               LNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcactggggtgtctactgacgcgaatgacagca                tgccgggtgcatcctgagggaggagcagtatc
                    atactaaatactgttttgtcgaatgaaaccaacatttgta                atgcgggttcatattaagatagaaaaattctt
                    agtaagggggtctatagctcccgtaaagaagcagctggc                gtatattcttcttgctgagtgtaaaaggctccg
                                                                                                            

Query   K <---Intron---> NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLKQFKSE
        | <   768bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||/|||||
Target  K                NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRASVSTVKSDMLEYLRQFKSE
        a                attccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgtgaagatgacgtcactaag
        a                acgccccattgccgattgactataatggataatttgcagtcttggaagcctgctacattaatgataga
        g                ccctactttgcaatgccggcggctctcgctggtaggttactcgtgccgtaccataacgggcgggcaca
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 533 ; UGA-SECIS: 977

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018327251.1:subseq_331924,65942_ Strand = - Positions = 29466 - 29391
 Found by:  Infernal (score=29.24) Covels (score=25.0)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -23.23

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .({(((((((--....([[(((-(((((((.................))))))).)))]])......-..)))))))}).
 target  UAGGGGCAUC--UCCAUGAUGG-UGGGUCCCAAAGCCCCUGUGGGCAGGACCCAACCAGAACCUUCC-UUGGUGCCUGUC
                         ****           ^^^                       ****