_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-77
 Query name: gi|253314489|ref|NP_001156611.1| glutathione peroxidase 2 [Bos taurus] >gi|926702966|ref|XP_005686039.2| PREDICTED: glutathione peroxidase 2 [Capra hircus] >gi|942097455|ref|XP_005909825.2| PREDICTED: glutathione peroxidase 2 [Bos mutus] >gi|965799724|ref|XP_011971120.2| PREDICTED: glutathione peroxidase 2 [Ovis aries musimon] >gi|965947842|ref|XP_004010769.2| PREDICTED: glutathione peroxidase 2 [Ovis aries] >gi|296482981|tpg|DAA25096.1| TPA: glutathione peroxidase 2 [Bos taurus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/502327435/tempfiles/temptarget.fasta
 Chromosome: NW_018340754.1:subseq_232234,63111_ Strand: +
 Positions:
 -Exon 1  30000        30221
 -Exon 2  32764        33111

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2542bp   > ||||||||||
Target  MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggata
        tcatcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtctcgcccccttccgcgggatccgcacgaggtgtgcgtacaccgcccaccgggccccgcgcttcctccatatg                gctgtagcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLVQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctctggcttcaagcataatacgcctggttatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctactatacatag
        ccgtcctgtacgcccctcggttgttgcgtaccccggcgcccttccgtccgttcgcccgccgccatgcgctggcctggaggcccccccccaccccatccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 205 ; UGA-SECIS: 655

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = NW_018340754.1:subseq_232234,63111_ Strand = + Positions = 33317 - 33381
 Found by:  Infernal (score=26.37) Covels (score=28.01)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -23.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....([[{(((((({(((......-..-----...)))}))))))}]])----....)))))))).
 target  AGUCUUCAC---AAAAUGAUGGCACCUUCCUAAAUC-UG-----UAUGGGCGGUGUCUGAG----AAGAGUGGAGGCC
                         ****           ^^^                       ****