------- SECIS element -- id:1 -- grade:B ---- Chromosome = KZ294541.1:subseq_1365949,51581_ Strand = - Positions = 16507 - 16425 Found by: Infernal (score=10.87) Covels (score=12.69) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -9.31 ..(((((((...............(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((({(...............([[(({(((((((((...............)))))))))}))]])..--..-.)}))))).. target GGGUCUCGUGUUCAUGGCUGUGCGUGAGGAAGUGACGGGAAGACAAAAGCUGUGCUUGUUAUUCCUGAGGA--CG-AAGGAGAUGG **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = KZ294541.1:subseq_1365949,51581_ Strand = - Positions = 18715 - 18633 Found by: Infernal (score=10.87) Covels (score=12.69) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -9.31 ..(((((((...............(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((({(...............([[(({(((((((((...............)))))))))}))]])..--..-.)}))))).. target GGGUCUCGUGUUCAUGGCUGUGCGUGAGGAAGUGACGGGAAGACAAAAGCUGUGCUUGUUAUUCCUGAGGA--CG-AAGGAGAUGG **** ^^ **** ------- SECIS element -- id:3 -- grade:B ---- Chromosome = KZ294541.1:subseq_1365949,51581_ Strand = - Positions = 22179 - 22097 Found by: Infernal (score=10.87) Covels (score=12.69) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -9.31 ..(((((((...............(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((({(...............([[(({(((((((((...............)))))))))}))]])..--..-.)}))))).. target GGGUCUCGUGUUCAUGGCUGUGCGUGAGGAAGUGACGGGAAGACAAAAGCUGUGCUUGUUAUUCCUGAGGA--CG-AAGGAGAUGG **** ^^ **** ------- SECIS element -- id:4 -- grade:C ---- Chromosome = KZ294541.1:subseq_1365949,51581_ Strand = - Positions = 24808 - 24739 Found by: Infernal (score=10.37) Covels (score=1.89) Stem2 length = 9 Apical loop length = 9 Insertion in stem2 = 0, 0 Free Energy = -14.62 ..(((((((.......(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ....({(((.--....{[[{{(({(((((((.....-..-----..)))))))}))}}]]}.....-...)))}).... target UUGGGUUGCU--UCCUUGACACCCUGGCUCGGAGGU-GA-----GGUGAGCCAAGGCCGACCCCCU-CAUGCAUCAGAC