_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-19
 Query name: gi|6649223|gb|AAF21431.1|AF166126_1 selenoprotein Zf1 [Homo sapiens]
 Query range: 1-277  (total 277)

 Target: /data/www-rg/seblastian_results/293455631/tempfiles/temptarget.fasta
 Chromosome: KZ294150.1:subseq_2264215,95001_ Strand: -
 Positions:
 -Exon 1  49581        49613
 -Exon 2  48933        49107
 -Exon 3  35088        35224
 -Exon 4  31587        31682
 -Exon 5  31143        31235
 -Exon 6  29135        29206
 -Exon 7  28843        28940
 -Exon 8  25000        25126

 Redox box: no

Query   MRSIPLRGFDQ <---Intron---> QMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG <---Intron---
        ||||||||||| <   473bp    > ||||/|/||| ||||/||/|| |/ //||||||||||||| |/||/||| ||||||||| <  13708bp   
Target  MRSIPLRGFDQ                QMSSLVMEHMESHGTQFLKGCIPTCIKRLPDGQLQVTWEDRTSGKKDTGIFDTVLWAIG              
        acaacccgtgc                catttgagcagtcgactcagtacataaaccggcccgatggcatgaagagatgagctgag              
        tggtctggtaa                atcctttaatacagcattaggtccgtagtcagatatcgaagccgaaacgttacttgct               
        gctcctgctcg                agttgcggcggtcccacggtccccccggtatcacgtcggccctcggcacctctcggta               
                                                                                                            

Query   > RVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE <---Intron---> GRPELTPTAIMAGRLLVQRLFGGSSDLMDYDN <---
        > |/|/||/|||// ||/ /|/ |||/||/// |||||||||||| | <   3405bp   > |||||||||||||/|| ||||| |||||||/| <   
Target    RIPETRNLNLKEVGVNINPENQKIIVDAQDVTSVPHIYAIGDVAE                GRPELTPTAIMAGKLLAQRLFGQSSDLMDYNN     
          cacgaaacacaggggaaacgacaaagggcggatgccatgaggggg                gccgcacagaaggaccgccctgcttgcagtaa     
         ggtcacgatataatgtatacaaaatttacaatcctcatactgatca                ggcatccccttcgattcagttgaccattaaaa     
         tataacatgtggatagtactgtagctttcgtcctcccctctatttg                ggtggacatcgaggtgcggctaacacggttct     
                                                                                                            

Query   Intron---> VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE <---Intron---> VYHAHYKPLEFTVAGRDASQCYVK <---Intron---> MV
        351bp    > |||||||||||||||||||||||||||||/| <   1936bp   > ||||/||||||||| |||||||/| <   194bp    > ||
Target             VPTTVFTPLEYGCVGLSEEEAVARHGQEHIE                VYHAYYKPLEFTVAERDASQCYIK                MV
                   gcaagtactgtgtggttggggggccgcgcag                gtcgttaccgtagggcggtcttaa                ag
                   tcccttcctaaggtgtcaaactcgagaaata                taacaaactatctcagaccagata                tt
                   tcttcctagatctgggaaggtgtctaagttg                ttcattaaagcagtaatacgtcag                gg
                                                                                                            

Query   CLREPPQLVLGLHFLGPNAGEVTQGFALGIK <---Intron---> CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        ||/|||||||||||||||||||||||||||| <   3716bp   > ||||||||||||||||||||||||||||||||||||||||||
Target  CLKEPPQLVLGLHFLGPNAGEVTQGFALGIK                CGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG
        tcagccccgcgcctcgcaggggacgtgcgaa                tggttgcgaaaggaccattggggaccatactgcgcagagttg
        gtaaccatttgtattgcacgatcagtctgta                ggccacattgctgtaccgcaattatgtcagcgtacctcgggg
        cgggcaggggcgccccccttattaattggc                acgcctaggggagcccccttgggcgatccgcacgcttgtccat
                                                                                               * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1365 ; UGA-SECIS: 1368

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ294150.1:subseq_2264215,95001_ Strand = - Positions = 23634 - 23561
 Found by:  Infernal (score=35.63) Covels (score=39.03)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -23.89

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((.--....([[{((({(((((((................)))))))})))}]])..--..-.)))))))).
 target  UAAAUGCCAA--AUGAUGACGGCCUGGGCAGAAACCCACUCUGUGGGCUGCCCAUGUCCGAGCC--CC-CUGGCGUUUC
                         ****           ^^^                        ****