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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: e-108
 Query name: gi|914927491|ref|XP_013220478.1| PREDICTED: selenoprotein T [Ictidomys tridecemlineatus]
 Query range: 1-195  (total 195)

 Target: /data/www-rg/seblastian_results/902212129/tempfiles/temptarget.fasta
 Chromosome: KZ297625.1:subseq_1,21219_ Strand: -
 Positions:
 -Exon 1  9853         10440

 Redox box: YES

Query   MRLLLLLLVAAS-AVARSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSIFKLVLIGL
        |||||||||||/  ||||/|||||| ||||||||/|| |||||||||||||/| ||||||||||||||||||||||||||||||| ||||||||||||||
Target  MRLLLLLLVAAALVVARSKASANLGSVPSKRLKMRYAMGPLLKFQICVSUGHRWVFEEYMRVISQRYPDIRIEGENYLPQPIYRHRASFLSIFKLVLIGL
        aaccccccggggtgggcaagtgacgagcaaataactgagcccatcatgttgcatgtggtacgaacctcgacagggatccccatacagttctatacgtagt
        tgtttttttccctttcggacccatggtcgagtatgactgcttatatgtcggaggttaaatgttgagacatgtagaaatcactagagccttcttattttgt
        ggtggtcggggggggcgcgcgccgccgccggagggctggggcgcgcttcatcgggtggcggtttggcaccacaagtcctaattacactcgaccacaaacg
                                                         *                                                  

Query   IIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS
        |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Target  IIVGKDPFAFFGMQAPSIWQWGQEKKVYACMMVFFLSNRIENQCMSTSAFEITLNDVPVWSKPESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS
        aaggagctgttgacgcaatctgcgaagtgtaagtttaaaagactataagtgaataggcgttacgtgccctacccgcacgagaacagcagtacccct
        tttgaactcttgtaccgtgaggaaaatacgttttttgagtaaagtccgctatctaatctgcacacgatcctaattattaaatatatatactcaagc
        cttcgctttctcgattccgggcggggctatggtccaccgtgcgtgaatatgatatcgtagtggattttacgaattattctagaccgcgtatgttaa
                                                                                                        
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 58 ; UGA-SECIS: 496

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ297625.1:subseq_1,21219_ Strand = - Positions = 9794 - 9720
 Found by:  Infernal (score=30.09) Covels (score=38.65)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -13.62

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..([((([(---(...{[[{(({(((((((((.............)))))))))}))}]]}.....-..))])))])..
 target  CUGACUGAC---ACUAUGAAGGCCUGUACUGAAGACAGCCAGCUGUUAGUACAGACCAGAUGCUUU-UUUGGCAGGCUC
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