_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-25
 Query name: gi|914930242|ref|XP_005341979.2| PREDICTED: glutathione peroxidase 6 [Ictidomys tridecemlineatus]
 Query range: 1-221  (total 221)

 Target: /data/www-rg/seblastian_results/113286254/tempfiles/temptarget.fasta
 Chromosome: KZ294329.1:subseq_603787,54660_ Strand: -
 Positions:
 -Exon 1  32464        32550
 -Exon 2  29504        29657
 -Exon 3  27173        27290
 -Exon 4  26501        26600
 -Exon 5  24997        25200

 Redox box: no

Query   MNWQFQATCLFPLFLIGFCQEILKPQMVK <---Intron---> MDCNKGVTGTIYEYGALTLSGEEYIQFKKYAGKHVLFVNVATYUGLTAQYPE <-
        ||||||||||||||||||||||||||||| <   2806bp   > ||||| |||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MNWQFQATCLFPLFLIGFCQEILKPQMVK                MDCNKRVTGTIYEYGALTLSGEEYIQFKKYAGKHVLFVNVATYUGLTAQYPE   
        aatctcgatctcttcagttcgacaccaga                agtaaagagaatgtggcacagggtactaatggacgctgaggattgtagctcg   
        tagataccgttcttttgtgaattacatta                tagaagtcgctaaagctctggaaatataaacgaattttatccaggtccaac    
        gcggcgcttttggcgtcctggcggaaggg                gtccaggtccctgtacctcttggccgcagttcgtcctccgcctacgatgtt    
                                                                                                *           

Query   --Intron---> LNALQEELKHLDVIVLGFPCNQFGKQEPGKNSEILSGLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
          2213bp   > ||||||||||||||||||||||||||||||||||||||| <   572bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELKHLDVIVLGFPCNQFGKQEPGKNSEILSGLK                YVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcactggagtgtctactgacgcgaatgactgca                tgccgggtgcatcctgagggaggagcagtatc
                    atactaaataatattttgtcgaatgaaacgaacattcgta                atgcgggttcatattaagatagaaaaattctt
                    agtaggggggtatctggcttttataaaaaaacagtctgc                gtgtattctccttgctgattataaaaggctacc
                                                                                                            

Query   K <---Intron---> NSCPPTSELLGSSKQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHQIPVSTVKLDILEYLKQFDTQ
        | <   1300bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NSCPPTSELLGSSKQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHQIPVSTVKLDILEYLKQFDTQ
        a                attccatgctgttaccttgcaagcgactatgatcggcgggcgacttccacgaagatgacgtcactgac
        a                acgccccattgccaattgactataatggataatttgcagtcttggtaatctgctatattaataataca
        g                tcctactatgttaaaccggcggcttccgctggcgggttactcgcgccgtactacagccgacaggttcg
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 170 ; UGA-SECIS: 614

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ294329.1:subseq_603787,54660_ Strand = - Positions = 24826 - 24751
 Found by:  Infernal (score=31.4) Covels (score=22.42)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -27.16

         ..(((((((.......(((((((((((((((...............))))))).))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         (({(((((((--....([[(((((-((((((...............))))))-.)))))]])......-..)))))))}))
 target  GAGGGGCAUU--UUCAUGAUGGUG-GGUCCGAAAGCCCCUCUGAGCCGGACC-CCACCAGAACCUUCC-UUGGUGCCUGUC
                         ****           ^^^                        ****