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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_\
|*|_|*|_
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 Blastx evalue: 2e-75
 Query name: gi|984134165|ref|XP_015359060.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Marmota\
 marmota marmota]
 Query range: 31-200  (total 200)

 Target: /data/www-rg/seblastian_results/379065064/tempfiles/temptarget.fasta
 Chromosome: KZ294008.1:subseq_620125,50801_ Strand: +
 Positions:
 -Exon 1  24997        25094
 -Exon 2  25176        25320
 -Exon 3  25409        25560
 -Exon 4  25636        25660
 -Exon 5  25739        25798
 -Exon 6  25889        25915

 Redox box: no

Query   MCASHDDWRCCRSMHDFSAKDIDGHMVCLDKYK <---Intron---> GFVCIVTNVATQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ <-
         |||||||||||||||||||||||||||||||| <    81bp    > |||||||||||||||||||||||||||||||||||||||||||||||| <
Target  QCASHDDWRCCRSMHDFSAKDIDGHMVCLDKYK                GFVCIVTNVATQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ
        ctgtcggtcttctacgttgagaggcagtcgata                gtgtagaaggactgaaggataccggccgctggtgtcacgtctactgac
        agccaaagggggctaatccaatagattgtaaaa                gttgttcatccaggacataacattatacgacaggtgttctcgaatgga
        gtgcctcgcctccgtccacgcccgtgtcgcgc                gctgcccctgccgacaccacttgactgccattgctagcgttcccgtggg
                                                                     *

Query   --Intron---> EPGTNEEIKEFAASYNVKFDMYSKICVNGEDAHPLWKWMKVQPKGKGMLGN <---Intron---> AIKWNFTK <---Intron-
           88bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||| <    75bp    > |||||||| <    78bp
Target               EPGTNEEIKEFAASYNVKFDMYSKICVNGEDAHPLWKWMKVQPKGKGMLGN                AIKWNFTK
                     gcgaaggaagtggatagatgataaatgaggggccctataagccagagacga                gaatataa
                     acgcaaataatccgaatatatagatgtagaacactgagtatacagagttga                ctagatca
                     gagccggcggtctcttcaccgccgccgcggtccggggggacgcgggcgga                cccggcccg


Query   --> FLIDKNGCVVKRYGPMEEPL <---Intron---> VIEKDLPCYL
          > |||||||||||||||||||| <    90bp    >  |||||||||
Target      FLIDKNGCVVKRYGPMEEPL                -IEKDLPCYL
            tcagaagtggactgcaggcc                -agagccttc
            tttaaaggttagagctaact                -taaatcgat
            ccacgcctggggttcgggcg                -aggcgcctc

 Sequence until next stop:
TAG
 *

 Distance CDS-SECIS: 54 ; UGA-SECIS: 423

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ294008.1:subseq_620125,50801_ Strand = + Positions = 25970 - 26041
 Found by:  Infernal (score=32.83) Covels (score=40.22)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -18.25

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(({((---....([[{(((((((((....................)))))))))}]])----....))}))})..
 target  UACCUGGCA---ACUAUGACGGCCCGCCUGCAAACCAGCCUUGCUGGUGGGGCGGGCCUGAG----AACCUGGCGUGCA
                         ****           ^^^                        ****