_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-71
 Query name: gi|914910036|ref|XP_005326972.2| PREDICTED: glutathione peroxidase 1 [Ictidomys tridecemlineatus]
 Query range: 1-119  (total 202)

 Target: /data/www-rg/seblastian_results/353061286/tempfiles/temptarget.fasta
 Chromosome: KZ294477.1:subseq_589404,50317_ Strand: +
 Positions:
 -Exon 1  24961        25317

 Redox box: no

Query   MCATRLATMAAQSTVYTFSARPLAGGEPLSLGSLRGKVLLIENVASLUGTTLRDYTQMNELQKRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRP
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MCATRLATMAAQSTVYTFSARPLAGGEPLSLGSLRGKVLLIENVASLUGTTLRDYTQMNELQKRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRP
        atgaacgaaggctagtattgcccggggctacgtccgagccagaggtctgaaccgtacaagccaccgccgtggcgtctactgccgagaaggacatcatgcc
        tgccgtcctccacctactccgctcggactgtgctggattttaatcctggcctgaacataataagtgcggttttgtcgaatgaaaacaaaattactaatgc
        gtctgggaggcgcagccccgcggtcggtgtgctggcgggccgtgtttaccgtgcccagcgaggccgcgcgcgcccgccgtatggcggcagtgtccgccac
                                                       *                                                    

Query   GGGFEPNFPLFEKCEVNGS
        |||||||||||||||||||
Target  GGGFEPNFPLFEKCEVNGS
        gggtgcatcctgatggagt
        gggtacatcttaagatagc
        tcgcgctccccggcggtcc
                           
 Sequence until next stop: 
AGGACACTCCTCTTATCCTGA
 R  T  L  L  L  S  * 

 Distance CDS-SECIS: 45 ; UGA-SECIS: 258

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ294477.1:subseq_589404,50317_ Strand = + Positions = 25363 - 25437
 Found by:  Infernal (score=28.65) Covels (score=20.88)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 1, 0
 Free Energy = -19.04

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ((((((((((......{[[{((((((.[(((.........-----...)))]))))))}]]}......-..))))))))))
 target  GUGGGGAUUUCAUCCAUGAUGGUGUUUACUCUAAACCUGC-----AUUGAGGAACGCCUGAUUUCCGG-GAAAAUCCCCAU
                         ****            ^^^                       ****