_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-22
 Query name: gi|930244373|ref|XP_014166515.1| PREDICTED: ethanolaminephosphotransferase 1 isoform X1 [Geospiza fortis]
 Query range: 1-371  (total 371)

 Target: /data/www-rg/seblastian_results/57058803/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  61538        61567
 -Exon 2  61141        61249
 -Exon 3  58832        58906
 -Exon 4  57065        57327
 -Exon 5  54925        55033
 -Exon 6  53431        53479
 -Exon 7  52849        53029
 -Exon 8  51719        51901
 -Exon 9  49982        50095

 Redox box: no

Query   MHPFWNAIVK <---Intron---> IFPTWLAPNLITFSGFLLLVFNFFLMAYFDPDFYASA <---Intron---> PDHQHVPNGVWIVVGLLNFMA
        |||||||||| <   288bp    > ||||||||||||||||||||||||||||||||||||| <   2234bp   > |||||||||||||||||||||
Target  MHPFWNAIVK                IFPTWLAPNLITFSGFLLLVFNFFLMAYFDPDFYASA                PDHQHVPNGVWIVVGLLNFMA
        accttagaga                atcatcgcataattgtcccgtattcagttgcgttgtg                cgcccgcaggtagggccatag
        tactgactta                ttccgtccattctcgttttttattttcatacatacc                ccaaaatcagtgtttgttattc
        gtccgcccgg                cctcggcatgagttccggtccccccgaccctcttct                tttcgctaccggcgggccccgc
                                                                                                            

Query   YTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACVYFVVTVYSTFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPW
        |||| <   1504bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  YTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACVYFVVTVYSTFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPW
        tatg                ggggacgccaataaccggctgcgcgatgtgttggagttatgcgtaggagtgctccctggttttactctgataagactcct
        act                agtagaacggcacgcctgattaagtaggcgtatttctacctgggccgtgttttatttgttttctttcagaaaacgttttcg
        cga                ttttgggacgccccccgggctcccgccgccgctgccgccccccccccccccgcccggggcgcccccccgggtcagtccgcg
                                                                                                            

Query   GYDVSQV <---Intron---> TISIVYIVTAFVGVEAWYAPFLFNFLYRDLFTAMIIA <---Intron---> CALTVTLPMSLYNFYK <---Int
        ||||||| <   2031bp   > ||||||||||||||||||||||||||||||||||||| <   1445bp   > |||||||||||||||| <   401
Target  GYDVSQV                TISIVYIVTAFVGVEAWYAPFLFNFLYRDLFTAMIIA                CALTVTLPMSLYNFYK        
        gtggacg                aatagtagagtgggggttgctctatttagctagaaag                tgcagaccaactatta        
        gaatgat                ctcttattccttgtacgacctttattagattccttt                cgctctctctgtaataa        
        atcccgg                ctatccagactgatgcgtatcgttcatacactagtt                ctcctgcgcgcgcccc         
                                                                                                            

Query   ron---> AYKNNTLKHHSVYEILLPLVSPVLLFLLCTTWIFLSPTDILEVQPRLFYFMVGTAFANIS <---Intron---> CQLIVCQMSSTRCQPL
        bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   947bp    > ||||||||||||||||
Target          AYKNNTLKHHSVYEILLPLVSPVLLFLLCTTWIFLSPTDILEVQPRLFYFMVGTAFANIS                CQLIVCQMSSTRCQPL
                gtaaaatacctgtgaccccgtcgtctcctaatatctcagacggccactttaggagtgaat                tccagtcaaaactccc
                caaaactaaactaatttcttccttttttgccgtttcccattatacgttatttgcctcatc                gatttgatggcggact
               gctatccggcctgtacggcggcngggcggcccgccgcctccggcgcgcctcgtaactccct                cggcgcggccagcgcc
                                                                                                            

Query   NWMLLPIAAVLLLVVSGLAPGSETLLLYLLTAFLTLAHIHYGVVV <---Intron---> VSQLSRHFNIRPFSLRKPTPDULGAEEEKIGLRAAEGL
        ||||||||||||||||||||||||||||||||||||||||||||| <   1623bp   > ||||||||||||||||||||||||||||||||||||||
Target  NWMLLPIAAVLLLVVSGLAPGSETLLLYLLTAFLTLAHIHYGVVV                VSQLSRHFNIRPFSLRKPTPDULGAEEEKIGLRAAEGL
        atacccagggcccggtgcgcgagaccctccagtcacgcactgggg                gaccaactaaccttccacacgtcgggggaagccggggc
        agtttctccttttttcgtccggactttattccttctcataagttt                tgatggatatgctctgacccagtgcaaaatgtgccagt
        cggggccgcggggggtggtactagcggcggaccccgaccccagcg                gcggcgccccgcccaggctgcagaagggaccggtaaag
                                                                                          *                
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1124 ; UGA-SECIS: 1172

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 48857 - 48782
 Found by:  Infernal (score=30.96) Covels (score=22.33)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -23.03

         ..(((((((.......(((((((((((((((.................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((((((---((..([[[({(((((((((.................)))))))))})]]]).....-)-))))))))..
 target  ACCUGUGCU---UGAAUGAAGAGUGUAGCUUAAACCCAGGCUCUGGAAAGGCUGCAUCCGGAAGAGAA-C-AAGCACAGCC
                         ****           ^^^                         ****