_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-39
 Query name: gi|929486160|ref|XP_014113405.1| PREDICTED: selenoprotein H isoform X1 [Pseudopodoces humilis]
 Query range: 7-149  (total 151)

 Target: /data/www-rg/seblastian_results/910312733/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50378        50574
 -Exon 2  50157        50302
 -Exon 3  49994        50085

 Redox box: YES

Query   LLRRRPHRLGSPRMAPRGRKRGAQQPPAAEAPETAEAPQKRPR--AQAKDEGSPGDIGPRVVIEHC <---Intron---> KSURVFGRNAAAVSAALR
        | |||  || |||||||||||||||| |||||||| ||||| |  |||/|| |||| ||||||||| <    75bp    > ||||||||||||||||||
Target  LHRRRLQRLDSPRMAPRGRKRGAQQPAAAEAPETAGAPQKRARAQAQAQDESSPGDTGPRVVIEHC                KSURVFGRNAAAVSAALR
        ccccaccccgtcaagccgaacggcccgggggcgagggccacgcgcgcgcggaacggagccggagct                aatcgtgcaggggaggcc
        tagggtagtaccgtccgggaggcaaccccaccaccgccaagcgcacacaaaggcgacgcgtttaag                agggttggaccctgcctg
        gcgtgcaccctcggtccgggcacgggagcgaggggacggggggcgcgcgcgcccgtccctgccgc                cgcacgcggcggggcgcgc
                                                                                            *               

Query   GAMAQLPVDINPRPPRRNSFEVSLVKEDGST <---Intron---> VELWSGIGKGPPRKLKFPQPETVVEALKSS
         |||||||||||||||||||||||||||||| <    71bp    > |||||||||||||||||||||||||||||/
Target  EAMAQLPVDINPRPPRRNSFEVSLVKEDGST                VELWSGIGKGPPRKLKFPQPETVVEALKSN
        ggagcccggaacccccaaatggtcgagggaa                ggctagagagcccacatcccgaggggcaaa
        actcatctatacgccggagtatcttaaagg                ctatgggtgagccgatatcacacttactaga
        gcgcggcgccccgggcgcccggcggggccc                cggggctcaggcccgggtcgggcggacggtc
                                                                                     
 Sequence until next stop: 
TTTCCGTAG
 F  P  * 

 Distance CDS-SECIS: 106 ; UGA-SECIS: 334

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 49887 - 49796
 Found by:  Infernal (score=14.11) Covels (score=11.01)
 Stem2 length = 8   Apical loop length = 26   Insertion in stem2 = 0, 0
 Free Energy = -14.22

         ..(((((((..........(((((((((((((((........................)))))))))))))))...........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuugggg---------cgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(({((((..........{[[(({(((({(((..........................)))}))))}))]]}.......-...))))}))..
 target  CAGGNGGCAUGAGCAUCCAUGAAGAGGCGAGACCAAGUGGGGGGCACCUGCCAGCCCCAGUCCCGUCCCUGAUGCUGCAG-CUCUGCCACUGC
                            ****           ^^                                 ****