_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-72
 Query name: gi|929463894|ref|XP_005485521.2| PREDICTED: glutathione peroxidase 1 [Zonotrichia albicollis]
 Query range: 1-196  (total 197)

 Target: /data/www-rg/seblastian_results/464497199/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49955        50197
 -Exon 2  50362        50706

 Redox box: no

Query   MAAAGAGGRVARLEELSAKPLGAAEPLSLGSLNGKVLLVVNVASLUGTTKRDYQQLNELQQRFGPRGLQVLGFPCNQFGHQ <---Intron---> ENC
        ||||||||||| ||||||||||||/||||||| |||||||||||||||||||/ ||||||||||||||||||||||||||| <   164bp    > |||
Target  MAAAGAGGRVAGLEELSAKPLGAAKPLSLGSLKGKVLLVVNVASLUGTTKRDFLQLNELQQRFGPRGLQVLGFPCNQFGHQ                ENC
        agggggggcgggcggctgaccgggacctcgtcagagccggaggtctgaaacgtcccagcccctgccgccgcgtctactgcc                gat
        tcccgcgggtcgtaatccactgccactctgctagatttttatcctggccagattataataagtgcggtattgtcgaatgaa                aag
        gggaagtgtggggggggggcgcgggggggcgggcgggggctgggcacgcgctcggccggggcccccgcgcccccccgcccg                acc
                                                     *                                                      

Query   TNEEILPMLEHVRPGNGFKPNFMMFEKCDVNGKDAHPLFTFLKEALPFPHDDPSSLMTNPQYIIWSPVCRNDIAWNFEKFLIRPDGMPFKRYSRHFETIK
        ||/||| ||||||||/||||||||||||/||||||||||||||||||||||||||||||||||||||||||||/|||||||| |||/|||||||||||||
Target  TNDEILLMLEHVRPGSGFKPNFMMFEKCEVNGKDAHPLFTFLKEALPFPHDDPSSLMTNPQYIIWSPVCRNDISWNFEKFLIGPDGVPFKRYSRHFETIK
        aaggaccacgcgccgagtacataatgatggagaggccctatcaggcctccggcttcaaacctaattcgtcagattatgatcagcgggctactacctgaaa
        caaatttttaatgcgggtacattttaagatagaacacttcttaactctcaaacccttcacaattgcctggaatcgataatttgcagtctagaggatacta
        cctgctcgcgctttccccgctcggcggcggcggcgctgcccgagggccgccccggggccggcctgcggcctcccgccggcctccccgccacccgtcaccg
                                                                                                            

Query   IQDDIEMLLQKV
        ||||||/|||||
Target  IQDDIELLLQKV
        acggagtcccag
        taaatatttaat
        cgtctggtgggt
                    
 Sequence until next stop: 
GCCTAG
 A  * 

 Distance CDS-SECIS: 89 ; UGA-SECIS: 539

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 50796 - 50860
 Found by:  Infernal (score=28.57) Covels (score=15.07)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 1, 0
 Free Energy = -12.0

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((([(((((---....{[[{((((((.((((......--------...))))))))))}]]}..--..-.)))))])))
 target  CAGAUUUUG---CUUGUGAUGGUGCAUCUUCCAAAUC--------CUUGAAGUGUGCCUGAUGU--UU-UCAAAAGUUG
                         ****            ^^^                       ****