------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 47416 - 47331 Found by: Infernal (score=23.89) Covels (score=39.27) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -8.73 ..(((((((................(((((((((((((((.................)))))))))))))))........))))))).. model uucggucaugcg---------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(({((((................{[[{(({{(((((((.................)))))))}}))}]]}..--..-.))))})).. target GGUCUCUGUGACAAGCCAGCUUGAAUGAUGUNUUCCUUAUAAAUGGUAAACAAACCAGUGAGGAUUACUGAUGC--UA-GACAGCGGAC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 51541 - 51458 Found by: Infernal (score=11.56) Covels (score=4.72) Stem2 length = 9 Apical loop length = 22 Insertion in stem2 = 0, 0 Free Energy = -7.52 ..(((((((........(((((((((((((((..................)))))))))))))))...........))))))).. model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc ...(([(((........([[((((((((((......................))))))))))]]).......-...)))]))... target UCCCUGCAAAGCCUGAGUGAUAUUUCUGAAUUAAUUUGUAUCUAACAAAUCCUUCAGAAAUAGAAGGAAGUG-UCCUUGAAGUNU **** ^^ ****