------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 49609 - 49538 Found by: Infernal (score=36.54) Covels (score=35.74) Stem2 length = 11 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -23.64 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(({(((((--....{[[(((((((((([(.....-.........)]))))))))))]]}..--..-)))))})).. target UCUGCUUGCA--UUUGUGAGGACAGGAGCAUAAACU-AUGACCUAGGGGCUCCUGUCUGAUGU--UU-UGCAAUCAAG **** ^^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 48824 - 48756 Found by: Infernal (score=21.68) Covels (score=15.64) Stem2 length = 10 Apical loop length = 10 Insertion in stem2 = 0, 0 Free Energy = -15.1 ..(((((((.......((((((((((.(((((...............))))).))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc .((({((((---....([[{((((({{(((((........-----..)))))}})))))}]])..--..-.))))}))). target ACACCAUAA---UUAAUGAUGGUUUAAUAGGGAAAUUACU-----ACUCCUACAAAACCUGAAUC--UU-UUUAUUGUGA **** ^^^ ****