------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 48857 - 48782
 Found by:  Infernal (score=30.96) Covels (score=22.33)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -23.03

         ..(((((((.......(((((((((((((((.................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((((((---((..([[[({(((((((((.................)))))))))})]]]).....-)-))))))))..
 target  ACCUGUGCU---UGAAUGAAGAGUGUAGCUUAAACCCAGGCUCUGGAAAGGCUGCAUCCGGAAGAGAA-C-AAGCACAGCC
                         ****           ^^^                         ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 101413 - 101341
 Found by:  Infernal (score=15.15) Covels (score=14.52)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -15.7

         ..(((((((.......((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .({((({(((--....{[[{((({(({((([(.....---.......)])))}))})))}]]}..--...)))})))}).
 target  ACUUGGUGGG--CCUGUGAUGGCUGAAGCCAAGAUUG---CCGACAAUGGGCAUCUGCCUGAUGG--ACACCCUCUGUGC
                         ****                                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 68525 - 68454
 Found by:  Infernal (score=13.02) Covels (score=12.55)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -21.56

         ..(((((((.......((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .((((({((---((..{[[[((((((({(((......--.........)))})))))))]]]}..--.)-)))}))))).
 target  CCCAGAGCC---UCCAUGAACACUUUGGACAAUAGCC--UCUCAGGGAUGUGCAGGGUGGGAUUG--UG-GGGGUCUGGC
                         ****                                       ****