------- SECIS element -- id:1 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 67175 - 67137 Found by: Infernal (score=11.08) Stem2 length = 9 Apical loop length = 14 Insertion in stem2 = 1, 0 Free Energy = -7.54 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uccgggcaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc -----------------[[{((((((.(((..........-----....)))))))))}]]------------------ target -----------------GAUGAAGGCCAAGUUAAACUGUG-----AGCUCUUGCCUUCUGA------------------ *** ^^^ *** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 74357 - 74287 Found by: Infernal (score=10.21) Covels (score=19.98) Stem2 length = 9 Apical loop length = 9 Insertion in stem2 = 0, 0 Free Energy = -4.6 ..(((((((...........(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ((({((((((..........{[[[{({((((((((.....-..-----..))))))))})}]]]}----..-))))))}))) target UUCCUAUAUGCAGAAUGCUAUGAAAAAGAAGUAAUAAACU-UU-----UGGUUAUUUCCUAGGAC----AA-CAUAUGAGGG **** ^^^ ****