------- SECIS element -- id:1 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 45672 - 45598
 Found by:  Infernal (score=16.92) Covels (score=22.95)
 Stem2 length = 7   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -10.77

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({({(((((--....{[[{(({{{(((((..................)))))}}}))}]]}..--...)))))})}))
 target  GGCUUGUGUG--CUCAUGAAGAUUUCUAACAAAAGAGUGAUUAACUCAGUUAGCUUUCAGAUGC--CCUCACACUGCCU
                         ****          ^^^                         ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 63453 - 63382
 Found by:  Infernal (score=13.49) Covels (score=10.11)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -6.64

         ..(((((((.......(((((((((((((((....................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(({(((((.--....([[{(([(((((((------(..............))))))))]))}]])..--..-.)))))})).
 target  CUAAGAUAUA--UUAAUGAAGUAAGCUUGU------ACUCCUCAUCAAGGAUGUGAGUUGACAGAGGC--UA-GAUAUCAUGC
                         ****                   ^^                     ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 64363 - 64433
 Found by:  Infernal (score=12.86) Covels (score=6.32)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -15.29

         ..(((((((.......((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....([[{({(((((((((......-..........)))))))))})}]])----..-.)))))))..
 target  CAUGCUUCA---UGGGUGAAGAGGUUGUUUGUAAGAC-AGCUGGAGACCAGACAGCCACAGAG----CU-UUGAAGUGCA
                         ****            ^^                         ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 107931 - 107855
 Found by:  Infernal (score=12.05) Covels (score=1.46)
 Stem2 length = 9   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -27.4

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((--((..([[{(((((({(((.....................)))}))))))}]])..--))-))))))))..
 target  CUGCAGCACU--GCAGUGAUUUUCAUUUGGAAAGGAUUUUUUUUGAGGUGACCAUGUGAAAUGAGGG--GU-GGUGCUGCUC
                         ****          ^^^                            ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 85296 - 85215
 Found by:  Infernal (score=11.78) Covels (score=4.68)
 Stem2 length = 10   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -9.69

         ..(((((((..........(((((((((((((((....................)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((({(..........([[{((((((((({(....................)})))))))))}]])----....)})))))..
 target  AAGGGGACACUGGUACUUGUGAAGUUUGUAGCCUACCCUACUGCAGAAGUAGGAGAGCUGCAAACAGAG----CCUUUUUCUCUAC
                            ****            ^^                            ****                 

------- SECIS element -- id:6 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 78448 - 78384
 Found by:  Infernal (score=11.75) Covels (score=0.97)
 Stem2 length = 7   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -5.59

         ..(((((((.......(((((((((((.......................)))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuu-u-uuucaugaccggc
         .(({{({((.......{[[{(((((((.........--------------)))))))}]]}......-...))})}})).
 target  UUCCAGUUGCCUCUUUUGAUGGCUUUGGUCUGAAAG--------------CAAAGCCUGAUAGUUUC-UUCUGUCAUGAU
                         ****                                     ****                   

------- SECIS element -- id:7 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 97474 - 97400
 Found by:  Infernal (score=10.95) Covels (score=1.21)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -4.16

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(({((((.......([[((([((({(((((..........)---))))})))])))]]).....-...))))}))..
 target  CCAUCUUUGGCUCUCUUGAAGUAUUUUGUUGUGGUGACUAAAG---UGACUGAAGACUGAAGUCUG-AGGCAGAAAUAA
                         ****                                     ****