_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-63
 Query name: gi|930232514|ref|XP_005418797.2| PREDICTED: glutathione peroxidase 3 [Geospiza fortis]
 Query range: 1-226  (total 226)

 Target: /data/www-rg/seblastian_results/554390299/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  48940        49026
 -Exon 2  50003        50156
 -Exon 3  50353        50470
 -Exon 4  50640        50739
 -Exon 5  50830        51048

 Redox box: no

Query   MGGCSRSSWIVPLFLAGLLQLGRSEEREK <---Intron---> VECYPSVNDTIYNYGALTIDGDEYIPFERYKGKTVLFVNVATYUGLTLQYVE <-
        ||||||||||||| | ||/|||||| /|| <   976bp    > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MGGCSRSSWIVPLLLXGLVQLGRSEVKEK                VECYPSVNDTIYNYGALTIDGDEYIPFERYKGKTVLFVNVATYUGLTLQYVE   
        aggttcaatagccctggcgccgcaggaga                ggttctgagaatatggcaaggggtactgatagaagctgaggattgcacctgg   
        tgggcggggttctttngttatgggataaa                tagacctaactaaagctctagaaatctagaagacttttatccaggtctaat    
        ggccccccgtgctcgtgccggcatggggg                ggccgggcccccccgcgcctgcgccccggcgggagccccacacacgaggtt    
                                                                                                *           

Query   --Intron---> LNALQDELRNEGLVVLGFPSNQFGKQEPGQNSEILPALK <---Intron---> YVRPGGGFVPNFQLFQKGDVNGAKEQKIFTFL
          196bp    > |||||||||/||||||||||||||||||||||||||||| <   169bp    > ||||||||||||||||||||||||||||||||
Target               LNALQDELRDEGLVVLGFPSNQFGKQEPGQNSEILPALK                YVRPGGGFVPNFQLFQKGDVNGAKEQKIFTFL
                     cagccggcagggcggcgtctactgacgcgcatgaccgca                tgccgggtgcatcctcagggaggagcaatatc
                    atactaaatgaagttttgtccaatgaaacgaacattccta                atgcgggttcatattaagatagcaaaattctt
                    agtaaatggacgacgcctccccatgggaccgcagccagt                gtcgaatcttcccggcgagtgcgcggggccccg
                                                                                                            

Query   K <---Intron---> NACPPVVEDFGNPNRLFWEPLRIHDIKWNFEKFLVSPEGVPVMRWYHRTNIAVVKKNIMTYLRRRQQENHDDQ
        | <    90bp    > ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Target  K                NACPPVVEDFGNPNRLFWEPLRIHDIKWNFEKFLVSPXGVPVMRWYHRANIAVVKKNIMTYLRRRQQENHDDQ
        a                agtccggggtgacaacttgcccacgaatatgatcgacgggcgacttccgaagggaaaaaatcaccccgacggc
        a                acgccttaatgacagttgactgtaatagataatttgcagtcttggaagcatcttaaattcatgggaaaaaaaa
        g                cctcggggctgcctgccggtggctccggccggcggccntgtcgcgctcccctcgggccgccgggggggcctcg
                                                                                                  
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 280 ; UGA-SECIS: 739

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 51329 - 51410
 Found by:  Infernal (score=19.15) Covels (score=32.04)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -18.76

         ..(((((((...............(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({((([(...............([[((((({((((((.................))))))})))))]])----.--.)])))})..
 target  UCCCUGGAGGAGACCACAUCUCCAUGAAGGCUUGGCCCGAAAGCCCCGGGCUGGGGCGGGCCCGGCCUGAG----C--GUGCCGAGCA
                                 ****           ^^^                         ****