------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 80574 - 80651
 Found by:  Infernal (score=29.53) Covels (score=30.99)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -15.63

         ..(((((((.......((((((((((.(((((...............))))).)))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuu-uuucaugaccggc
         ...(((({(.......([[((((((((((((......-..........))))))))))))]]).....-.-.)}))))...
 target  UUAGGAUGCCAGCUGAUGAGGAUUUGUUUGUCAAACC-AUACCAUGGUGCAAACAAGUCUGAGCUUUG-C-UGGGUCCCUC
                         ****            ^^^                        ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 35442 - 35512
 Found by:  Infernal (score=13.39) Covels (score=9.31)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -9.84

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((---(((({[[((({((((((.------.............))))))})))]]}.....)-))))))))))..
 target  UAGUUUUUC---UACAUGAAAAUUUUUUAC------AUUAUCUGUCCACUAAAAACUUUGAUGGGGCU-GUGGAAAGAUCA
                         ****                                      ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 99633 - 99700
 Found by:  Infernal (score=12.23) Covels (score=3.54)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -14.2

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((......([[(((((({((((------......-----...))))}))))))]])..--...))))))))..
 target  AGGAAAGAGUUAUUUAUGAUAUUUUAAACA------CAUUGC-----UGCUGUUCAAAAUAGAGGA--UUUGCUCUUUUGA
                         ****                                        ****