------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 56051 - 56142
 Found by:  Infernal (score=31.13) Covels (score=24.32)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -24.26

         ..(((((((......................(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg---------------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((((((((.....................{[[{((((({(((((................)))))})))))}]]}..--...))))))))))
 target  CUUUGCCUGGAUUAGCGCUGCGGUGCUUUCUUGACGUUGUUGCUCAAAAUCUCCUUGUGAGGUGAGCUGCGACUGAUGU--CUGCCAGGCAAGG
                                        ****           ^^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 31105 - 31185
 Found by:  Infernal (score=12.57) Covels (score=10.91)
 Stem2 length = 8   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -5.06

         ..(((((((.......(((((((((((((((...............))))))))).))))))..............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuu-----u-uuucaugaccggc
         ...((((((---....{[[(({((({((((.................))))}))).}))]]}..........-...))))))...
 target  GCUGUACCU---UUAAUGAGGCUGUCUUUCAAAUCCUGAACAGAAUAGAAAAAUAUCCUGAUGCCAGCAGUU-CCCAGGUACUCU
                         ****          ^^^                         ****                       

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 104624 - 104691
 Found by:  Infernal (score=11.78)
 Stem2 length = 7   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -7.24

         ..(((((((.......((((((((((((.....................))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({{(---....{[[((((({(((..............-------)))})))))]]}......-.-.)}}))))..
 target  CCAGCUCUC---CUGGUGAAGGUGUGGCCCCCAGGGAGAAAU-------GCCUCAUCUGAUGAAAUA-C-AGCCAGUUUC
                         ****        ^^                           ****