------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 49788 - 49722 Found by: Infernal (score=27.92) Covels (score=19.71) Stem2 length = 9 Apical loop length = 8 Insertion in stem2 = 0, 0 Free Energy = -25.4 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((((((......{[[{(((((({(((.......---------.)))}))))))}]]}..--...)))))))).. target UAUCUGGCUGUAUUAAUGAAAGGCUGAGUCUAAAAUC---------UGACCUAGCCUAGAUGU--UUCCAGUCAGAGA **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 23443 - 23362 Found by: Infernal (score=10.14) Covels (score=4.61) Stem2 length = 7 Apical loop length = 19 Insertion in stem2 = 0, 0 Free Energy = -5.01 ..(((((((.................(((((((((((.......................)))))))))))........))))))).. model uucggucaugcg----------UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc ...((((((.................{[[{(((((((...................----)))))))}]]}..--....))))))... target ACUUUAUUCCCCAAGGAGUGCUUCNGUGAUUGUUUCCAUGUAGAGGAACAACACUG----GGGAACAUGAUGU--AGCUGAAUAACUU **** ****