------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 51790 - 51864 Found by: Infernal (score=32.58) Covels (score=26.27) Stem2 length = 8 Apical loop length = 20 Insertion in stem2 = 0, 0 Free Energy = -21.95 ..(((((((.......(((((((((((((((..................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((((((--....{[[(((({(({(((....................)))}))}))))]]}----...)))))))).. target CUUUCUGUGC--UCAAUGAAGCCCGCUGUGCAAACCAGGAGGUCCCUGGUCACUGCUGGCUGAC----ACUGCACAGAGCA **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 54351 - 54428 Found by: Infernal (score=10.8) Covels (score=10.3) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 1, 0 Free Energy = -13.97 ..(((((((........((((((((((.(((((.....................)))))))))))))))........))))))).. model uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(({[((((........{[[{(((({(.((((------.................)))))}))))}]]}..--....))))]})). target GUCAGUCUCAUGUCACAUGAAGCCUUGGCCCU------GUGUGCUGCUCCUGCCGAGGGCCGGGCAGAUCC--UCUCGGGAAAGGA **** ****