------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 48084 - 48009
 Found by:  Infernal (score=21.76) Covels (score=32.4)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -8.13

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({({((.--....([[((((((((((((.................))))))))))))]])..--....))})}))..
 target  UAGAAGCAGA--GCAAUGAAGUUGUACUGGGAACUCCUUCCUCAAGGAUCCGGUGUAACUGAACC--ACAGUUUCAUUAA
                         ****           ^^                          ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 29847 - 29799
 Found by:  Infernal (score=14.7)
 Stem2 length = 9   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -9.5

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         ----------------([[((((((((((.......................))))))))))]])-----------------
 target  ----------------UGAAGAAAGUCUUGAAAACCCAAUUACACACGAUCAAAGACUUUCUGAG-----------------
                         ****          ^^^                            ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 13009 - 13092
 Found by:  Infernal (score=11.17) Covels (score=3.74)
 Stem2 length = 10   Apical loop length = 26   Insertion in stem2 = 1, 0
 Free Energy = -16.27

         ..(((((((.......((((((((((.(((((........................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC---------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((({{(((--(...{[[(((((((.((((..........................)))))))))))]]}..--..))))}})))).
 target  GGAAACACCU--CAGAUGAAGGGGGGACUUGAAAAGAGACCCCUGUACAUCUUUCUACAAGCCUCUUUGAUAA--UAGAGGAAUUUUA
                         ****           ^^^                                 ****