------- SECIS element -- id:1 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 40130 - 40207 Found by: Infernal (score=10.95) Covels (score=10.83) Stem2 length = 11 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -6.73 ..(((((((.........((((((((((.(((((................))))).)))))))))).........))))))).. model uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuu-uuucaugaccggc ...({((((.........([[{((((({((((((.........-----..))))))})))))}]]).....-...))))})... target UAAAUCUUUCCUGUAAUAUGAUAAUUUUAAGCAUAAAAUCACA-----GAAUGCUUUGGGUUUGAAGGGAC-CUUAAAGCUCAU **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 175642 - 175724 Found by: Infernal (score=10.43) Covels (score=5.47) Stem2 length = 9 Apical loop length = 20 Insertion in stem2 = 0, 0 Free Energy = -6.01 ..(((((((.......((((((((((.(((((..................))))).)))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC---cuuuuuggggcgggc-caggcCuGAUGuuu-uuucaugaccggc ..((((({(.......{[[{(((({({((((....................))))})}))))}]]}.....-...)}))))).. target CCAGGAUCUCAUUCCAUGAUGCGACAUCAGUGGAUUUUAAACCCCACCAAAAUUGCUUUUGCUGAUCAAAC-UGCAAAUCUUAU **** ****