------- SECIS element -- id:1 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 51178 - 51258 Found by: Infernal (score=31.53) Covels (score=12.65) Stem2 length = 10 Apical loop length = 23 Insertion in stem2 = 0, 1 Free Energy = -13.2 ..(((((((.......(((((((((((((((.....................)))))))).)))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccag-gcCuGAUGuuuuuucaugaccggc (((((((((.--....{[[{((((((((((.......................))))))).)))}]]}..--....))))))))) target CUAGUAUUUC--UUUGUGAUGACCGAUUUUGAAAUGGGUUUCUCUAAUGCCAGGAAAUCGCGUCUGAUGU--UGUCAAAUACUAG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 68405 - 68478 Found by: Infernal (score=11.07) Covels (score=6.27) Stem2 length = 8 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -8.76 ..(((((((.......(((((((((((((((...................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...((({(((......([[((({({(((((------...............)))))})})))]])..--...)))})))... target AUAAGUGUUACAUUUGUGAUGUGGUCCUCU------UCUCAUUUCAGUGAUGGAGGUCGACAGAGAC--UUUUAAGAUUCCA **** ****