------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389887.1:subseq_389251,100209_ Strand = + Positions = 69530 - 69600
Found by: Infernal (score=38.05) Covels (score=31.66)
Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 0, 0
Free Energy = -23.63
..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
.((((((((---....([[{((({((((((.................))))))})))}]])----....)))))))).
target UGGUGCCAG---AUGAUGACGAUCUGGGUGGAAACCCAUCCUGUGGGCACCCACAUCCGAG----CCCGCUGGCAUUU
**** ^^^ ****
------- SECIS element -- id:2 -- grade:C ----
Chromosome = KV389887.1:subseq_389251,100209_ Strand = + Positions = 15466 - 15540
Found by: Infernal (score=16.69) Covels (score=12.43)
Stem2 length = 8 Apical loop length = 15 Insertion in stem2 = 0, 0
Free Energy = -23.16
..(((((((........(((((((((((((((.................))))))))))))))).........)))))))..
model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
...(([(((((......{[[{{((((((((.------..............))))))))}}]]}.....-.)))))]))...
target CAGUGACCAGCUCCAGAUGAUAGGCUCAGCC------UUCUCAUGACACAUGCUGAGCUCUGAUGCUGG-UGCUGGGCAGGC
**** ****