_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 1e-35
 Query name: gi|1044408652|ref|XP_017355920.1| PREDICTED: selenoprotein W [Cebus capucinus imitator]
 Query range: 1-82  (total 87)

 Target: /data/www-rg/seblastian_results/810389692/tempfiles/temptarget.fasta
 Chromosome: KV389451.1:subseq_3051134,100212_ Strand: -
 Positions:
 -Exon 1  49967        50212

 Redox box: YES

Query   MALTVRVVYCGAUGYKSKYLQLKKKLEDEFPGCLDISGEGTPQATGFFEVTVAGKLIHSKKKGDGYVDTESKFLKLVAAIKA
        /||||/||||| ||||||||||||||||||||||||| |||||||||||/||||||||||||||||||||||||||||||||
Target  VALTVQVVYCGTUGYKSKYLQLKKKLEDEFPGCLDISAEGTPQATGFFEITVAGKLIHSKKKGDGYVDTESKFLKLVAAIKA
        ggcagcggttgatgtatatcccaaatgggtcgtcgatgggaccgagttgaagggatactaaagggtggagaatcacgggaag
        tctctattaggcggaacaatataaataaatcggtatccagccaccgttatctcgattacaaagagatacagattattcctac
        gtcccactttctaccgcgttgggggaatgccccgccccgatcgccgccaagataggtctggactccgcgacgtggggtccac
                    *                                                                     
 Sequence until next stop: 
CCCCCGCCTTGGCTCAGGGCTAATGTGCCCTGA
 P  P  P  W  L  R  A  N  V  P  * 

 Distance CDS-SECIS: 55 ; UGA-SECIS: 262

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389451.1:subseq_3051134,100212_ Strand = - Positions = 49911 - 49823
 Found by:  Infernal (score=23.24) Covels (score=22.92)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -10.55

         ..(((((((.................(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcg----------UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((({(.................{[[{((({(((({(....................)}))))})))}]]}..--....)})))))..
 target  UACAGCCCCUCUCAGCAGACGCUUCAUGACGGGCAGGAGUGAAAUGCCUCGUGGACGCCAGGUCCUUCUCCGAUGC--UCUCGUGGCUGCU
                                   ****           ^^^                          ****