------- SECIS element -- id:1 -- grade:A ---- Chromosome = KV389451.1:subseq_3051134,100212_ Strand = - Positions = 49911 - 49823 Found by: Infernal (score=23.24) Covels (score=22.92) Stem2 length = 8 Apical loop length = 20 Insertion in stem2 = 0, 0 Free Energy = -10.55 ..(((((((.................(((((((((((((((..................)))))))))))))))........))))))).. model uucggucaugcg----------UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((({(.................{[[{((({(((({(....................)}))))})))}]]}..--....)}))))).. target UACAGCCCCUCUCAGCAGACGCUUCAUGACGGGCAGGAGUGAAAUGCCUCGUGGACGCCAGGUCCUUCUCCGAUGC--UCUCGUGGCUGCU **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = KV389451.1:subseq_3051134,100212_ Strand = + Positions = 18013 - 18097 Found by: Infernal (score=10.08) Covels (score=0.72) Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 1, 0 Free Energy = -11.36 ..(((((((.............((((((((((((.(((...............)))))))))))))))...........))))))).. model uucggucaugcg------UuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc ...(((((((............{[[{((((({((.((......--.........))))})))))}]]}.......-..)))))))... target CCUAGGCUGGAGUGCAAUAGCAUGAUCUUGGCUCACUGCAGCC--UCUGCCUUGAGGGUUCAAGUGAUUCUUCUU-UCUCAGCCUCCU **** ****