------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389451.1:subseq_3051134,100212_ Strand = - Positions = 49911 - 49823
Found by: Infernal (score=23.24) Covels (score=22.92)
Stem2 length = 8 Apical loop length = 20 Insertion in stem2 = 0, 0
Free Energy = -10.55
..(((((((.................(((((((((((((((..................)))))))))))))))........)))))))..
model uucggucaugcg----------UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
..((((({(.................{[[{((({(((({(....................)}))))})))}]]}..--....)})))))..
target UACAGCCCCUCUCAGCAGACGCUUCAUGACGGGCAGGAGUGAAAUGCCUCGUGGACGCCAGGUCCUUCUCCGAUGC--UCUCGUGGCUGCU
**** ^^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389451.1:subseq_3051134,100212_ Strand = + Positions = 18013 - 18097
Found by: Infernal (score=10.08) Covels (score=0.72)
Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 1, 0
Free Energy = -11.36
..(((((((.............((((((((((((.(((...............)))))))))))))))...........)))))))..
model uucggucaugcg------UuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
...(((((((............{[[{((((({((.((......--.........))))})))))}]]}.......-..)))))))...
target CCUAGGCUGGAGUGCAAUAGCAUGAUCUUGGCUCACUGCAGCC--UCUGCCUUGAGGGUUCAAGUGAUUCUUCUU-UCUCAGCCUCCU
**** ****