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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 2e-73
 Query name: gi|7706511|ref|NP_057416.1| methionine-R-sulfoxide reductase B1 [Homo sapiens] >gi|821025096|ref|XP_004093089.2| PREDICTED: methionine-R-sulfoxide reductase B1 isoform X2 [Nomascus leucogenys] >gi|182676387|sp|Q9NZV6.3|MSRB1_HUMAN RecName: Full=Methionine-R-sulfoxide reductase B1; Short=MsrB1; AltName: Full=Selenoprotein X; Short=SelX >gi|6649219|gb|AAF21429.1|AF166124_1 selenoprotein X [Homo sapiens] >gi|14336773|gb|AAK61300.1|AE006640_4 annexin A2 like - ? : selenoprotein X [Homo sapiens] >gi|10441425|gb|AAG17033.1| methionine sulfoxide reductase [Homo sapiens] >gi|34782903|gb|AAH03127.2| Selenoprotein X, 1 [Homo sapiens]
 Query range: 1-116  (total 116)

 Target: /data/www-rg/seblastian_results/74311264/tempfiles/temptarget.fasta
 Chromosome: KV389832.1:subseq_2795568,100344_ Strand: +
 Positions:
 -Exon 1  50000        50347

 Redox box: no

Query   MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSS
        |||||||||||||||||||/||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Target  MSFCSFFGGEVFQNHFEPGIYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEVLKVSSGKCGNGLGHEFLNDGPKLGQSRFUIFSSS
        atttattggggtcactgcgatgtgatgtgcttactatgcttctcgtagaacggaggaccgcactggtagtagatgagtgcgtcaggcacgctcttataat
        tctggttggattaaatacgtatgcaggaattcggcaacacccgcctcactacagtcagcaaagcattatcggaggagtgaattaagcatgacgtgttggc
        ggcccccgcatcgtctggcttgtcatctggccccggtacgcagagctgctccccgcgtggctatacgggctcgtccggctacgccccggggcacaacccc
                                                                                                      *     

Query   LKFVPKGKETSASQGH
        ||||||||||||||||
Target  LKFVPKGKETSASQGH
        catgcagagatgtcgc
        tattcagaaccccaga
        ggtctacaattacggc
                        
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 490 ; UGA-SECIS: 553

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389832.1:subseq_2795568,100344_ Strand = + Positions = 50838 - 50909
 Found by:  Infernal (score=34.98) Covels (score=23.19)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -26.33

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....{[[(((((((((((.................)))))))))))]]}..--..-.))))))}).
 target  CCUGGUCAC---UGCAUGAUCCGCUCUGGUCAAACCCUUCCAGGCCAGCCAGGGUGGGGAUGG--UC-UGUGACCUGC
                         ****           ^^^                       ****