------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389506.1:subseq_2207742,100551_ Strand = - Positions = 49677 - 49608
Found by: Infernal (score=31.58) Covels (score=32.57)
Stem2 length = 11 Apical loop length = 14 Insertion in stem2 = 0, 0
Free Energy = -12.54
..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
..({(((((---....{[[{((((((((([(.....-.........)])))))))))}]]}----....)))))})..
target CUACUUGCU---UUAAUGAGAACAGAAACAUAAACU-AUGACCUAGGGGUUUCUGUUGGAU----AAUUAGCAAUUUA
**** ^^^ ****
------- SECIS element -- id:2 -- grade:A ----
Chromosome = KV389506.1:subseq_2207742,100551_ Strand = - Positions = 49254 - 49189
Found by: Infernal (score=30.45) Covels (score=21.41)
Stem2 length = 10 Apical loop length = 10 Insertion in stem2 = 1, 0
Free Energy = -12.4
..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
...((((((---....{[[{((((((.((((......--.-----...))))))))))}]]}..--..-.))))))...
target UUUCCAUAG---UCAAUGAUGGUUUAAUAGGUAAACU--A-----AACCCUAUAAACCUGACCU--CC-UUUAUGGUUA
**** ^^^ ****