_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-26
 Query name: gi|821102030|ref|XP_012375807.1| PREDICTED: selenoprotein M, partial [Dasypus novemcinctus]
 Query range: 13-125  (total 125)

 Target: /data/www-rg/seblastian_results/506748788/tempfiles/temptarget.fasta
 Chromosome: KV389684.1:subseq_1556918,100428_ Strand: +
 Positions:
 -Exon 1  49439        49507
 -Exon 2  49724        49758
 -Exon 3  50116        50194
 -Exon 4  50273        50428

 Redox box: YES

Query   APDLLHFVPLQTCGGUQLNRLKE <---Intron---> VKAFVTQDIPFY <---Intron---> HNLVMKHLPGADPELVLLDHRYEELE <---In
         ||| ||/||||||||||||||| <   216bp    > |||||||||||| <   357bp    > ||||||||||||||||||  |||||| <    7
Target  TPDLSHFIPLQTCGGUQLNRLKE                VKAFVTQDIPFY                HNLVMKHLPGADPELVLLGRRYEELE       
        acgctctacccatggtccaccag                gagtgacgactt                cacgaacccgggcgcgccgcctggcg       
        ccatcattctacggggatagtaa                tacttcaatcta                aatttaatcgcacattttgggaaata       
        ttcacttatcgctgaaggccagg                ggtcctgctac                tccgggacctgcccgcgggccccgagg       
                       *                                                                                    

Query   tron---> RIPLSDMTREEINALVQELGFYRKAAPDAPVPPEYLRAPARPAEGDPDRADL
        8bp    > |||||/|||||||||||||||||| |||| |||||/ ||||| |   |  ||
Target           RIPLSEMTREEINALVQELGFYRKVAPDAQVPPEYVWAPARPPEETSDHTDL
                 caccagaacggaagcgcgcgttcaggcggcgccgtgtgcgaccggatgcagc
                 gtctgatcgaatacttaatgtagatccacatccaatgcccgccaaccaacat
                 ctgccagccagccgggggcccccgggccgggccgcgggctgcggatacctcg
                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 45 ; UGA-SECIS: 336

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389684.1:subseq_1556918,100428_ Strand = + Positions = 50474 - 50547
 Found by:  Infernal (score=16.73) Covels (score=28.54)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -24.49

         ..(((((((.......((((((((((((((..................))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggu-gggccaggcCuGAUGuuuuuucaugaccggc
         .((((({((---(...{[[[(({((((((((................))))))))}))]]]}..--...)))}))))).
 target  UCCUGGAGA---CAGAUGAAGCGCUCAGCAACCCGGGAGUACCUCCCUUGCUGAGGGCGGAUGC--CCCGUCCCCAGGC
                         ****           ^^                         ****