_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-11
 Query name: gi|1044392144|ref|XP_017401022.1| PREDICTED: ethanolaminephosphotransferase 1 isoform X1 [Cebus capucinus imitator]
 Query range: 1-397  (total 397)

 Target: /data/www-rg/seblastian_results/921239867/tempfiles/temptarget.fasta
 Chromosome: KV389606.1:subseq_44514,100272_ Strand: +
 Positions:
 -Exon 1  31122        31178
 -Exon 2  43711        43779
 -Exon 3  44205        44313
 -Exon 4  46514        46588
 -Exon 5  50010        50272
 -Exon 6  51583        51691
 -Exon 7  59925        59973
 -Exon 8  61389        61569
 -Exon 9  62858        63040
 -Exon 10 65474        65569

 Redox box: no

Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  12532bp   > ||||||||||||||||||||||| <   425bp    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSAVDTNPLSLYVMHPFWNTIVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagggaacctttgaccttaaaga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgactta                ttccgtccattctcgttttttatttt
        gtccacgcggggtcttgcg                cttgcctattgtggtatgctaag                atttggtctgatttctggtacttgag
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFVAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        ||||||||||| <   2200bp   > ||||||||||||||||||||||||| <   3421bp   > ||||||||||||||||||||||||||||||||
Target  AYFDPDFYASA                PGHKHVPDWVWIVVGILNFVAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgcacgcgtgtagggacatggtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtat
        actttcttca                agtcgtgtcgtgtagcccctaccta                ttacagatgacttctcaggttctcgttgattct
                                                                                                            

Query   VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1310bp   > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ggagttatgagtaggagtgctccctggttttactctgataagactcctgtgaacg                aattgtagagggggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tatgtcctaaaattcttttttcgagatgttccgctgagtcggttcgagatctcgg                ttttccagtgtgatgcgtatcgttcatac
                                                                                                            

Query   LFTTMIIG <---Intron---> CALCVTLPMSLLNFFR <---Intron---> SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILWSPSDILEIH
        |||||||| <   8233bp   > |||||||||||||||| <   1415bp   > ||||||||||||||||||||||||||||||||||||||||||||
Target  LFTTMIIG                CALCVTLPMSLLNFFR                SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILWSPSDILEIH
        ctaaaaag                tgttgaccaattatta                ataaaatacatgtggagctttcttctattagtacttctgatgac
        ttccttt                ggctgtctctgttattg                gaaaactaaactaacttcttccgtttttcccgttgcccattata
        actagtt                ctaatgttagtaactc                actatccgactactacgtccttacggctgtaggctgttattagat
                                                                                                            

Query   PRIFYFMVGTAFANIT <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIHYGVRV <---In
        |||||||||||||||| <   1288bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   24
Target  PRIFYFMVGTAFANIT                CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIHYGVRV       
        caatttaggagtgaaa                tccagtcaaaactcatatccgccttggtggatggtttagaaactataagtacgcactggcg       
        cgttatttgcctcatc                gatttgatggcggcctagtttcttttttttatgtccatagtttactccctctcataagtgt       
        taacctgtaactctca                tggttcagttcgtatgtgggttccgtcagacaagctctgctcataaattctgcccttaaag       
                                                                                                            

Query   tron---> VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
        33bp   > ||||||||||||||||||||||||||||||||
Target           VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
                 gaccaactcatctttaacatgtcgaggaaagc
                 taatggatatactctgacacagtgtaaaatgt
                 agggccttgtcccaggaacataaagaagttcg
                                      *          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1286 ; UGA-SECIS: 1316

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389606.1:subseq_44514,100272_ Strand = + Positions = 66856 - 66934
 Found by:  Infernal (score=28.32) Covels (score=20.8)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -6.11

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(({({((......{[[[((((((({(((...................)))})))))))]]]}..--..-))})}))...
 target  GAAGUUUGUGCUUUAAUGAAGAGUGUAUCUUAAACCCCUUUUUUUUGGACAGGUUGCACUUGGAUAA--AA-UAGGCACCAC
                         ****           ^^^                           ****