------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389606.1:subseq_44514,100272_ Strand = + Positions = 66856 - 66934
Found by: Infernal (score=28.32) Covels (score=20.8)
Stem2 length = 10 Apical loop length = 19 Insertion in stem2 = 0, 0
Free Energy = -6.11
..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
...(({({((......{[[[((((((({(((...................)))})))))))]]]}..--..-))})}))...
target GAAGUUUGUGCUUUAAUGAAGAGUGUAUCUUAAACCCCUUUUUUUUGGACAGGUUGCACUUGGAUAA--AA-UAGGCACCAC
**** ^^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389606.1:subseq_44514,100272_ Strand = + Positions = 10156 - 10236
Found by: Infernal (score=11.01) Covels (score=0.93)
Stem2 length = 8 Apical loop length = 18 Insertion in stem2 = 0, 0
Free Energy = -17.4
..(((((((.........(((((((((((((((................)))))))))))))))..........)))))))..
model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
..(((((((.........{[[(((({((({((..................))})))}))))]]}......-.-.)))))))..
target GCCUUCCCUACAAGCCCAUGAUGCAAAUUUCUGCAGAGAAGAGCUGGCGGGGCAGUAUGCAGAUGGGAUG-G-GAGGGAAGAG
**** ****
------- SECIS element -- id:3 -- grade:B ----
Chromosome = KV389606.1:subseq_44514,100272_ Strand = - Positions = 15717 - 15644
Found by: Infernal (score=10.41) Covels (score=13.52)
Stem2 length = 11 Apical loop length = 8 Insertion in stem2 = 0, 0
Free Energy = -10.6
..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
..((((([((((....{[[(((((([((({((.......-----.))})))]))))))]]}......-))))])))))..
target UCUUAAUAGCAAUAGAUGAGAAUUGAUGUUGAAAGCACA-----GUUCACAGUAGUUUGAUCAGACC-UUGUGAUUGAAC
**** ^^ ****