------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389679.1:subseq_2553092,100146_ Strand = - Positions = 48825 - 48758
Found by: Infernal (score=27.8) Covels (score=26.97)
Stem2 length = 10 Apical loop length = 9 Insertion in stem2 = 0, 0
Free Energy = -11.92
..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
...(((({(---....([[{(([(((((((......--------...)))))))]))}]])......-...)}))))...
target GUUGGAACA---UUAAUGAUGGAACAUGGCCAAACU--------UCAGUCAUGUGCCUGAAGCCAUG-GUUUCUUCCCCG
**** ^^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389679.1:subseq_2553092,100146_ Strand = + Positions = 13935 - 14011
Found by: Infernal (score=18.53) Covels (score=11.36)
Stem2 length = 9 Apical loop length = 19 Insertion in stem2 = 1, 0
Free Energy = -21.63
..(((((((.......((((((((((.(((((.................)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
.(((((((..--....{[[((({(((.((((...................)))))))})))]]}..--.....))))))).
target CUGGGGGCAG--GGCAUGAUGUCUCAUGCCUGCAAUCCCAGCAUUUUGGGAGGCUGAAGCAGACUG--CUUGAGCUCCCAA
**** ^^ ****