_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|1044439159|ref|XP_017370963.1| PREDICTED: selenide, water dikinase 2 [Cebus capucinus imitator]
 Query range: 1-447  (total 447)

 Target: /data/www-rg/seblastian_results/443769469/tempfiles/temptarget.fasta
 Chromosome: KV389978.1:subseq_1127457,100827_ Strand: +
 Positions:
 -Exon 1  50000        51340

 Redox box: no

Query   MAEASATGACGEAMAAMVAAEGSSGPAGLTLGRNFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPPLGRGLAGAQEEAS
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MAEASATGACGEAMAAMVAAEGSSGPAGLTLGRNFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPPLGRGLAGAQEEAS
        agggtgaggtgggaggagggggttgcggtacgcattatcctgccgtgcacatccagttgaagtgtagccgaccaccggcaccggccccgcgcgggcgggt
        tcaccccgcggactccttccagccgccgtctggatcaagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcctgggtcgcaaacc
        ggacggtcccgggggggatgaccgcggcgtgcgcccccgccgcgggcccgcggggccccggcaccgcgggggcacggaggggcggcagcgcggctgaggg
                                                                      *                                     

Query   QETGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVKGFRD
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  QETGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVKGFRD
        cgagggcacatcgcgagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaatatcagacaaagggcgagaccagagtcg
        aacgcgcgcctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtgaaagaatcctttagtga
        gacagccccttacgccggccccccggtgcgcgggcgcctccggatccgggcattccggtccccgcttgtccgggaccccgtgtgggcagagacgcactgt
                                                                                                            

Query   AAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVISREEVELAYQEAMFNMATLNRT
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVISREEVELAYQEAMFNMATLNRT
        ggggggaggaggcaggactaaaggggaggtccagtaacgaggggggtgtaactgacgggagcctcgacgataagaagataggggcgtcggataagacaaa
        ccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatcaaacttatcctagc
        gtgaagtagctgatgcctgtactatctgacgatacagcccggtgtgggacagaatgttctccaggtttaagtaagggccaaggggctgacgctgtcccat
                                                                                                            

Query   AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQA
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQA
        gggtacatagcggagaagtgacgctcacgaccaaggttgacaccaagaagggaagagctgcccgatggatggtcatccagcggctttgaattatgggccg
        ccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaagagaac
        tatagcattctgcattactctaaccgctgaaaacagctttttgaatcggtcccgctagtgttaacatactgaagttgtaaggtctttacaccgtagtcag
                                                                                                            

Query   WIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDNSNASSEPCS
        |||||||||||||||||||||||||||||||||||||||||||||||
Target  WIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDNSNASSEPCS
        taggaggagacagcaagaccgaggcccggagggcgcgatagttgctt
        gttgttaagagccgttaacgttattcggccccctccaacacccacgc
        gctctgagacagcgctcggattacattgcattttttctatcctgtcg
                                                       
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 562 ; UGA-SECIS: 1714

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389978.1:subseq_1127457,100827_ Strand = + Positions = 51903 - 51979
 Found by:  Infernal (score=30.1) Covels (score=21.59)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -24.45

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({(((((--....([[{(((((((((....................)))))))))}]])......-.-)))))}))))
 target  UUGGUCUCUG--UUAAUGACGUCUCUCCCUCCAAACCCCAUUAAGGACUGGGAGAGGCAGAGCAAGCC-U-CAGAGCCCAG
                         ****            ^^                        ****