------- SECIS element -- id:1 -- grade:A ---- Chromosome = KV389978.1:subseq_1127457,100827_ Strand = + Positions = 51903 - 51979 Found by: Infernal (score=30.1) Covels (score=21.59) Stem2 length = 9 Apical loop length = 20 Insertion in stem2 = 0, 0 Free Energy = -24.45 ..(((((((.......(((((((((((((((................)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc (((({(((((--....([[{(((((((((....................)))))))))}]])......-.-)))))})))) target UUGGUCUCUG--UUAAUGACGUCUCUCCCUCCAAACCCCAUUAAGGACUGGGAGAGGCAGAGCAAGCC-U-CAGAGCCCAG **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = KV389978.1:subseq_1127457,100827_ Strand = + Positions = 44900 - 44975 Found by: Infernal (score=10.11) Covels (score=6.86) Stem2 length = 9 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -17.89 ..(((((((............(((((((((((((((..................)))))))))))))))........))))))).. model uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc (((((((((((..........{[[((((([[(((.------...............)))]])))))]]}..--)--)))))))))) target UUCUCACAUUUGCCCCAGAUAUGAAGCUGAAGCUU------UCUGUCACUUGGGAUGGUGGCAGCUGAUGA--A--GGUGUGAGGG **** ****