------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389978.1:subseq_1127457,100827_ Strand = + Positions = 51903 - 51979
Found by: Infernal (score=30.1) Covels (score=21.59)
Stem2 length = 9 Apical loop length = 20 Insertion in stem2 = 0, 0
Free Energy = -24.45
..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
(((({(((((--....([[{(((((((((....................)))))))))}]])......-.-)))))}))))
target UUGGUCUCUG--UUAAUGACGUCUCUCCCUCCAAACCCCAUUAAGGACUGGGAGAGGCAGAGCAAGCC-U-CAGAGCCCAG
**** ^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389978.1:subseq_1127457,100827_ Strand = + Positions = 44900 - 44975
Found by: Infernal (score=10.11) Covels (score=6.86)
Stem2 length = 9 Apical loop length = 16 Insertion in stem2 = 0, 0
Free Energy = -17.89
..(((((((............(((((((((((((((..................)))))))))))))))........)))))))..
model uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
(((((((((((..........{[[((((([[(((.------...............)))]])))))]]}..--)--))))))))))
target UUCUCACAUUUGCCCCAGAUAUGAAGCUGAAGCUU------UCUGUCACUUGGGAUGGUGGCAGCUGAUGA--A--GGUGUGAGGG
**** ****