_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-106
 Query name: gi|172046621|sp|Q32QL6.2|GPX4_CALJA RecName: Full=Phospholipid hydroperoxide glutathione peroxidase, mitochondrial; Short=PHGPx; AltName: Full=Glutathione peroxidase 4; Short=GPx-4; Short=GSHPx-4; Flags: Precursor >gi|63115348|gb|AAY33855.1| phospholipid-hydroperoxide glutathione peroxidase [Callithrix jacchus]
 Query range: 11-197  (total 197)

 Target: /data/www-rg/seblastian_results/294731075/tempfiles/temptarget.fasta
 Chromosome: KV389646.1:subseq_2887024,100419_ Strand: -
 Positions:
 -Exon 1  49943        50500

 Redox box: no

Query   KPALLCGALAAPGLAGTMCASQDDWRSARSMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQUGKTQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEP
        |||||||||| |||||| | |||||| ||| |/|||||||||| ||||||||||||||||||||||/||| | ||||| /|||||||||||| |||||||
Target  KPALLCGALADPGLAGTTCTSQDDWRCARSTHKFSAKDIDGHTFNLDKYRGFVCIVTNVASQUGKTEVNYAQPVDLHAPHAECGLRILAFPCPQFGKQEP
        acgcctggcggcgcggaatatcggtctgctacattgagaggcatacgatcgtgtagaaggtctgaaggatgccggccgccggtgtcacgtctcctgacgc
        accttggctcacgtcgccgccaaagggcgccaatccaatagactataaaggttgttcatccaggacataacactataccacaggtgttctcgcatgaaac
        gcggctgtgctgcgcccgcgcgccgctgtcgcgtccgctcgcgtcgcgcgccgcccccgccaacacagcctgtccgccactgttggcgcccccgcggggg
                                                                      *                                     

Query   GSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDKNGCVVKRYGPMEEPQVIEKDLPCYF
        | ||  ||||  |||||| ||||||| |||||||||||||||||  |||||/|||||||/||||||||  |||||||||||||||/|
Target  GGNEN-KEFATVYNVKFDTFSKICVNWDDAHPLWKWMKIQPKGKDLLGNAIQWNFTKFLIDKNGCVVKWCGPMEEPQVIEKDLPCHF
        ggaga-agtgagtagatgataaatgatgggccctataaaccagagccgagactataatcagaagtggattgcaggccgagagcctct
        ggaaa-aatcctaatatactgatgtagaacactgagtatacagaattgactagatcatttaaaggttagggctaacattaaatcgat
        gtcgc-agcctctccaccgccgccgcgtcccgggggggcgcgcgccaatccggcccgcctcgtctggggcacgggcgcaggcgcctc
                                                                                               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 52 ; UGA-SECIS: 421

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389646.1:subseq_2887024,100419_ Strand = - Positions = 49890 - 49815
 Found by:  Infernal (score=28.44) Covels (score=33.65)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -9.81

         ..(((((((........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({((({(........([[{(({((((((.......-...........))))))}))}]])..--....)})))})..
 target  CUUCCACCUGGCACCCAUGAUGGCCUGCCUGCAAACC-AGCUGAUGGUGGGGCAGACCUGAAAA--CCCAGCGUGCACC
                          ****           ^^^                       ****