------- SECIS element -- id:1 -- grade:C ----
Chromosome = KV389640.1:subseq_3351213,100275_ Strand = - Positions = 35343 - 35273
Found by: Infernal (score=15.58) Covels (score=9.28)
Stem2 length = 7 Apical loop length = 10 Insertion in stem2 = 0, 0
Free Energy = -7.32
..(((((((..........(((((((((((((((...............)))))))))))))))........)))))))..
model uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
..([((((((.........([[((({({((({(.........-------.)})))})})))]])..--..-))))))])..
target UACAUAUUUCUUGUGUGAAUGAAGAAAUCUGUCCACUCACAC-------UGUCAGUUCUCUGAGGA--AU-GAGAUAGGGU
**** ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389640.1:subseq_3351213,100275_ Strand = - Positions = 82500 - 82431
Found by: Infernal (score=10.98)
Stem2 length = 9 Apical loop length = 13 Insertion in stem2 = 2, 0
Free Energy = -9.52
..(((((((.......((((((((((.((.(((...............)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccug-gc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
...((((((.--....{[[{((((({.(-.(((.....--........)))-)})))))}]]}----....))))))...
target GGAGGGCAGU--GGUAUGACCUUGGCUC-ACUGCAACC--UCACCUCCCAG-GUUCAAGUGAU----UCUCCUGCCUCAG
**** ^^ ****