_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-26
 Query name: gi|1044438230|ref|XP_017370494.1| PREDICTED: glutathione peroxidase 3 isoform X1 [Cebus capucinus imitator]
 Query range: 1-271  (total 271)

 Target: /data/www-rg/seblastian_results/730594295/tempfiles/temptarget.fasta
 Chromosome: KV389966.1:subseq_685768,100182_ Strand: +
 Positions:
 -Exon 1  42853        42939
 -Exon 2  47485        47638
 -Exon 3  49037        49154
 -Exon 4  49386        49617
 -Exon 5  49994        50215

 Redox box: no

Query   MARLLQASCLLSLLLAGFVPQSRGQVKSK <---Intron---> VDCHGGMSGTIYEYGALTISGEEYVPFKQFAGKYLLFVNVASYUGLTGQYIE <-
        ||||||||||||||||||||||||||||| <   4545bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MARLLQASCLLSLLLAGFVPQSRGQVKSK                VDCHGGMSGTIYEYGALTISGEEYVPFKQFAGKYLLFVNVASYUGLTGQYIE   
        agccccgttcctcccggtgccacgcgata                ggtcggaagaatgtggcaaagggtgctactggatcctgaggattgcagctag   
        tcgttaccgttctttcgttcagggataca                tagaggtggctaaagctctggaaatctaatcgaattttatcgaggtcgaat    
        gcgggggccgccgcgccccggcgaagggg                gcctccgcccttgcacccctgggccccggttcaccctccacccacggcgct    
                                                                                                *           

Query   --Intron---> LNALQEELAPFGLVVLGFPCNQFGKQEPGENSEILPSLN <---Intron---> SLASAAHLGINPDSQPFLPVLSLPLISEACAH
          1398bp   > ||||||||||||||||||||||||||||||||||||||| <   231bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELAPFGLVVLGFPCNQFGKQEPGENSEILPSLN                SLASAAHLGINPDSQPFLPVLSLPLISEACAH
                     cagccggcgctgcggcgtctactgacgcggatgaccaca                tcgtggccgaacgtcctccgctcccatggtgc
                    atactaaatcctgttttgtcgaatgaaacgaacattcgta                ctccccatgtacacacttcttctcttcacgca
                    agtaagagtaattgctgctcccataagaaagcggccccc                tggtttcctaataccacccttgcttcttgctct
                                                                                                            

Query   LLGTHLRTFLNRYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK <---Intron---> NSCPPTSELVGTSDRLFWEPMKVHDIRWNFEKFLVGPDG
        ||||||||||||||||||||||||||||||||||||||||||||| <   376bp    > |||||||||||||||||||||||||||||||||||||||
Target  LLGTHLRTFLNRYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                NSCPPTSELVGTSDRLFWEPMKVHDIRWNFEKFLVGPDG
        ccgaccaatcaatgccgggtgcatcctgagggaggagcattatca                attccatgcggatgccttgcaagcgactatgatcggcgg
        ttgcatgcttagatgcgggttcatattaagatagaaaaatactta                acgccccattgccagttgactataatggataatttgcag
        ctgccaaacccgtcaatgctcctcggtgagtgtagaggacctcag                ccttccggcgtatccccgatggctcccgctggcgggatt
                                                                                                            

Query   IPIMRWHHRTTVSNVKMDILLYMRHRQAAQEVKRK
        |||||||||||||||||||||||||||||||||||
Target  IPIMRWHHRTTVSNVKMDILLYMRHRQAAQEVKRK
        acaactcccaagaagaagacttaacccggcggaaa
        tcttggaagcctgatatatttatgagaccaataga
        actgcgccgcgccctggccgacggcggacggcggg
                                           
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 643 ; UGA-SECIS: 1237

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389966.1:subseq_685768,100182_ Strand = + Positions = 50859 - 50932
 Found by:  Infernal (score=27.41) Covels (score=32.67)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -26.72

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((([((---((..([[((({((((((((.....--........))))))))})))]])......-.))))]))))..
 target  GGUGGCAUC---UUCAUGAGGGAGGGGCCCGAAGCC--CUUGUGGGCGGGCCUCCCCUGAGCCUGUC-UAAGGGGCCAGC
                         ****           ^^                        ****