------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389500.1:subseq_688484,100443_ Strand = + Positions = 50665 - 50728
Found by: Infernal (score=28.07) Covels (score=20.11)
Stem2 length = 9 Apical loop length = 10 Insertion in stem2 = 0, 0
Free Energy = -19.3
..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
..(((((((---(...([[{(((((({(((-.....-..-----...)))}))))))}]])----...))))))))..
target GGCCUUCAC---AGAAUGAUGGUACCUCCU-AAACC-UU-----CAAGGGUGGUGUCUGAG----AGGUGUGAAGGGC
**** ^^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389500.1:subseq_688484,100443_ Strand = - Positions = 39213 - 39142
Found by: Infernal (score=14.16) Covels (score=6.5)
Stem2 length = 9 Apical loop length = 18 Insertion in stem2 = 0, 0
Free Energy = -10.87
..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
.((((({((---....{[[((({(((((((..................)))))))})))]]}----....))}))))).
target GUUCCAAUU---CUCAUGAAUCCUUAAGCUCUCUCGGAAUCAAAGAGUGGUUUAAAGAUGAU----CGUAAAAUGGAAA
**** ****