_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|1044356152|ref|XP_017383588.1| PREDICTED: thyroxine 5-deiodinase [Cebus capucinus imitator]
 Query range: 1-304  (total 304)

 Target: /data/www-rg/seblastian_results/68737689/tempfiles/temptarget.fasta
 Chromosome: KV389478.1:subseq_1783742,100854_ Strand: -
 Positions:
 -Exon 1  49976        50887

 Redox box: no

Query   MPRQAASRLVVGEGEGSQGASGPAATMLRSLLLHSLRLCAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPDVELNSEGEEVPPDDPPI
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MPRQAASRLVVGEGEGSQGASGPAATMLRSLLLHSLRLCAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPDVELNSEGEEVPPDDPPI
        acccggtctgggggggtcggtgcggaacctccccttactgcagttcgctcctcgagtactccgtttacactcgccccgccgcgggcaagggggccggcca
        tcgacccgtttgagagcagccgccccttgctttactgtgcacccgttttcgttgcctttgttattgtgaattggggggacacatatagagaatccaacct
        gtcgcgggggcagcggcggtggtaccgcccggtccggcccgccgccgccgccccgccgcgcctcgtccgtcgccccgggcgctggcttacgggccccgcc
                                                                                                            

Query   CVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEE
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  CVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEE
        tgtggacctacgtcaggtcgcatgttacgcgggcgcatgggccggtcaccacgtgcgacccgcatgatatcctagcaagtcccgaatccgggtcaatagg
        gtcaaagtgctcctactgagaatattaacaaggcccacatttcagtagaattaacagagctttatgggcgccttcgtgctagttcaaagatattttataa
        caccccccccgggcgaggtcgggtccgggtgctggcccggtgccccgcgcccccgagccggtctcccccaagcggtgcccgcgccgcgccccccccccga
                                                                             *                              

Query   AHPSDGWVTTDSPYIIPQHRSLEDRVSAAKVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSELRTWLERYDEQLHGAR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AHPSDGWVTTDSPYIIPQHRSLEDRVSAAKVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSELRTWLERYDEQLHGAR
        gcctggtgaagtctaaccccacggcgaggagcccggcgtgcgcgaagataatgtggttgcctgacagaaatcggcgcggtcgtgccattgctggcccggc
        caccaggtccaccattcaaggtaagtgccattaagccggctttactcacggccagcatagtattaggcttaaggggcagaatcatgcgtagaaaatagcg
        accctcgccgccccccagcgcggcgccaggaggataccctgctccgcccccgttccccgtctccgtcctgcgacgcctccgctggctgggcttgggtttg
                                                                                                            

Query   PRRV
        ||||
Target  PRRV
        ccag
        cggt
        cggg
            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 592 ; UGA-SECIS: 994

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389478.1:subseq_1783742,100854_ Strand = - Positions = 49383 - 49310
 Found by:  Infernal (score=24.91) Covels (score=31.63)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -22.65

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((((((........([[{(((((({(((.................)))}))))))}]])----.....))))))))
 target  GGGGCCCCACUGCUGAUGAUGAACUGUCUCUAACUGGUCUUGACCACGAGCUAGUUCUGAA----UUGCAGGGGCCUC
                         ****           ^^                        ****