------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389771.1:subseq_1034201,100581_ Strand = - Positions = 45268 - 45196
Found by: Infernal (score=23.38) Covels (score=31.18)
Stem2 length = 10 Apical loop length = 18 Insertion in stem2 = 0, 0
Free Energy = -20.67
..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
(({((((((---....{[[(((((((((((..................)))))))))))]]}..--..-.))))))}))
target ACCAGUGUG---CGGAUGAUAACUACUGACGAAAGAGUUGUCGACUCAGUCAGUGGUUGGAUGU--AG-UCACAUUAGU
**** ^^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389771.1:subseq_1034201,100581_ Strand = + Positions = 22243 - 22326
Found by: Infernal (score=10.68) Covels (score=0.13)
Stem2 length = 11 Apical loop length = 12 Insertion in stem2 = 1, 0
Free Energy = -18.4
..(((((((...............((((((((((((.(((...............)))))))))))))))........)))))))..
model uucggucaugcg--------UuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
.(({(((((...............{[[{((((({((.(((((...-.......)))))))})))))}]]}..--....)))))})).
target UGCCUAGGCUGGAGUACAAUGGCAUGAUCUUGGCUCACGGCAACC-UCCCGCCUGCUGGGUUCAAGUGAUUA--UUCUGCCUAAGCC
**** ^^ ****