_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 4e-38
 Query name: gi|1044416749|ref|XP_017359921.1| PREDICTED: type I iodothyronine deiodinase isoform X4 [Cebus capucinus imitator]
 Query range: 1-185  (total 185)

 Target: /data/www-rg/seblastian_results/947736912/tempfiles/temptarget.fasta
 Chromosome: KV389748.1:subseq_962971,100341_ Strand: +
 Positions:
 -Exon 1  50000        50144
 -Exon 2  60438        60581
 -Exon 3  65152        65351
 -Exon 4  68364        68429

 Redox box: no

Query   MGLPGPGLWLKRLWVLLEVAVHVAVGKLLLTLFPDRVKKNILAMGDKTG <---Intron---> NRPLVLNFGSCTUPSFMFKFDQFKRLTEDFSSVAD
        ||||||||||||||||||||||||||||||||||||||||||||||||| <  10293bp   > |||||||||||||||||||||||||||||||||||
Target  MGLPGPGLWLKRLWVLLEVAVHVAVGKLLLTLFPDRVKKNILAMGDKTG                NRPLVLNFGSCTUPSFMFKFDQFKRLTEDFSSVAD
        agccgcgctcaactgctggggcggggacccattcgagaaaacgaggaag                aaccgcatgatatcttatatgctaacaggtatggg
        tgtcgcgtgtagtgtttatctatctgatttcttcagtaaattctgaac                gagctttatgggcgcctttataatagtcaatgctca
        gggcgaggggggcggcgggtgtgtgcagtgagtacacggcaacgccgg                acgcgggttattcatatgcatcacgattactttaat
                                                                                     *                      

Query   FLIIYIEEAHASD <---Intron---> GWAFKNNVDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYK <---
        ||||||||||||| <   4570bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   
Target  FLIIYIEEAHASD                GWAFKNNVDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQEGRILYK     
        tcaatagggcgtg                gtgtaaaggaaaccaccgcccggccccgaacctcggggaacacaagctggccgactaacggaacta     
        ttttataacacc                aggctaaatatgaaaataagtaccatttcggcagctttactaaaggatacctcagtattaaggttaa     
        tcctctaaataa                tcgttgccgccgtcgctgccggactgggcgccgctgggcgggcgctgccaaggagccacggcgcccg     
                                                                                                            

Query   Intron---> GKSGPWNYNPEEVRDVLEKLHS
        3012bp   > ||||||||||||||||||||||
Target             GKSGPWNYNPEEVRDVLEKLHS
                   gatgctatacgggcggcgacca
                   gacgcgaaacaatgattaatag
                   tacctgcctagattttgaactt
                                         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 958 ; UGA-SECIS: 1327

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV389748.1:subseq_962971,100341_ Strand = + Positions = 69388 - 69458
 Found by:  Infernal (score=33.07) Covels (score=25.92)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -12.42

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((.--....{[[{(({(((((((.........-----...)))))))}))}]]}.....-...))))))...
 target  UACAUAUUUG--UUUAUGAUGGCCACAGCCUAAAGUAUA-----CACGGCUGUGACUUGAUUCAAA-AGAAAAUGUUAU
                         ****           ^^^                       ****