------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389687.1:subseq_3301047,100188_ Strand = - Positions = 13789 - 13708
Found by: Infernal (score=30.48) Covels (score=27.93)
Stem2 length = 11 Apical loop length = 15 Insertion in stem2 = 0, 1
Free Energy = -18.46
..(((((((.......(((((((((((((((...............))))))))).))))))............)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuu---u-uuucaugaccggc
((((((((((((....{[[{(((((((((((...............))))))))).))}]]}........-))))))))))))
target CAAAGAUUUGCUUUAAUGAAGACUACACAGAAAACCUUUCUAAGGAUUUGUGUGGAUCAGAUAAAUACUU-GGCAAAUUUUUG
**** ^^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389687.1:subseq_3301047,100188_ Strand = + Positions = 27793 - 27870
Found by: Infernal (score=12.47) Covels (score=1.87)
Stem2 length = 8 Apical loop length = 19 Insertion in stem2 = 2, 0
Free Energy = -5.11
..(((((((..........((((((((((((..(((.................)))))))))))))))........)))))))..
model uucggucaugcg---UuaAUGAcGgccuggc--ccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
.(((((((((.........{[[{({(((((-..((...................))-)))))})}]]}----..-))))))))).
target UUUACAUACACUAGAGAUGUGACCCUAGAA-AAGAGAAACCAUGUCAUGGUGGGUC-UUCUAUGUGAU----UC-UGUAUGUGAC
**** ^^^ ****