------- SECIS element -- id:1 -- grade:A ---- Chromosome = KV389687.1:subseq_3301047,100188_ Strand = - Positions = 13789 - 13708 Found by: Infernal (score=30.48) Covels (score=27.93) Stem2 length = 11 Apical loop length = 15 Insertion in stem2 = 0, 1 Free Energy = -18.46 ..(((((((.......(((((((((((((((...............))))))))).))))))............))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuu---u-uuucaugaccggc ((((((((((((....{[[{(((((((((((...............))))))))).))}]]}........-)))))))))))) target CAAAGAUUUGCUUUAAUGAAGACUACACAGAAAACCUUUCUAAGGAUUUGUGUGGAUCAGAUAAAUACUU-GGCAAAUUUUUG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = KV389687.1:subseq_3301047,100188_ Strand = + Positions = 27793 - 27870 Found by: Infernal (score=12.47) Covels (score=1.87) Stem2 length = 8 Apical loop length = 19 Insertion in stem2 = 2, 0 Free Energy = -5.11 ..(((((((..........((((((((((((..(((.................)))))))))))))))........))))))).. model uucggucaugcg---UuaAUGAcGgccuggc--ccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(((((((((.........{[[{({(((((-..((...................))-)))))})}]]}----..-))))))))). target UUUACAUACACUAGAGAUGUGACCCUAGAA-AAGAGAAACCAUGUCAUGGUGGGUC-UUCUAUGUGAU----UC-UGUAUGUGAC **** ^^^ ****