------- SECIS element -- id:1 -- grade:A ----
Chromosome = KV389646.1:subseq_2886967,100509_ Strand = - Positions = 49947 - 49872
Found by: Infernal (score=28.44) Covels (score=33.65)
Stem2 length = 8 Apical loop length = 18 Insertion in stem2 = 0, 0
Free Energy = -9.81
..(((((((........(((((((((((((((...............)))))))))))))))........)))))))..
model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
..({((({(........([[{(({((((((.......-...........))))))}))}]])..--....)})))})..
target CUUCCACCUGGCACCCAUGAUGGCCUGCCUGCAAACC-AGCUGAUGGUGGGGCAGACCUGAAAA--CCCAGCGUGCACC
**** ^^^ ****
------- SECIS element -- id:2 -- grade:B ----
Chromosome = KV389646.1:subseq_2886967,100509_ Strand = - Positions = 71561 - 71487
Found by: Infernal (score=10.37) Covels (score=5.4)
Stem2 length = 8 Apical loop length = 18 Insertion in stem2 = 0, 1
Free Energy = -7.47
..(((((((.......(((((((((((((((...............))))))).))))))))..........)))))))..
model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
..((([{(((--....{[[(((((-((((.......-...........))))-.)))))]]}......-..)))}])))..
target UACCUACAGG--AUACUGAGGGCU-UGAUUGAAAGC-UAAACUGGGGUAUCG-GGGCUUGAUCCUAUA-AACUUCGGGGAG
**** ^^^ ****